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  5. Seita.5G279200.1

Seita.5G279200.1


Description : component *(SSL2/XPB) of multifunctional TFIIh complex & component *(SSL2/XPB) of TFIIh basal transcription factor complex


Gene families : OG_42_0003616 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003616_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.5G279200.1
Cluster HCAA Clusters: Cluster_255

Target Alias Description ECC score Gene Family Method Actions
Glyma.08G016400 No alias homolog of xeroderma pigmentosum complementation group B 1 0.03 Orthogroups_2024-Update
Mp3g10960.1 No alias subunit SSL2/XPB of multifunctional TFIIh complex.... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA 16Dec
MF GO:0005524 ATP binding IEA 16Dec
MF GO:0016787 hydrolase activity IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0005092 GDP-dissociation inhibitor activity IEP Predicted GO
MF GO:0005216 ion channel activity IEP Predicted GO
BP GO:0007264 small GTPase mediated signal transduction IEP Predicted GO
MF GO:0015276 ligand-gated ion channel activity IEP Predicted GO
MF GO:0022834 ligand-gated channel activity IEP Predicted GO
MF GO:0022836 gated channel activity IEP Predicted GO
MF GO:0022838 substrate-specific channel activity IEP Predicted GO
MF GO:0022839 ion gated channel activity IEP Predicted GO
MF GO:0030695 GTPase regulator activity IEP Predicted GO
BP GO:0035556 intracellular signal transduction IEP Predicted GO
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Predicted GO
InterPro domains Description Start Stop
IPR032438 ERCC3_RAD25_C 425 672
IPR006935 Helicase/UvrB_N 257 399
IPR032830 XPB/Ssl2_N 68 135
No external refs found!