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  5. Seita.5G280900.1

Seita.5G280900.1


Description : plastidial RNA splicing factor *(cPTH))


Gene families : OG_42_0001546 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001546_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.5G280900.1
Cluster HCAA Clusters: Cluster_33

Target Alias Description ECC score Gene Family Method Actions
A4A49_17274 No alias chloroplastic group iib intron splicing facilitator... 0.04 Orthogroups_2024-Update
Bradi2g02200 No alias Peptidyl-tRNA hydrolase family protein 0.04 Orthogroups_2024-Update
Sobic.003G084500.3 No alias component *(CRS2) of CRS2-CAF plastidial RNA splicing... 0.03 Orthogroups_2024-Update
evm.model.contig_477.5 No alias (at1g18440 : 137.0) Peptidyl-tRNA hydrolase family... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004045 aminoacyl-tRNA hydrolase activity IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Predicted GO
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Predicted GO
MF GO:0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity IEP Predicted GO
MF GO:0004853 uroporphyrinogen decarboxylase activity IEP Predicted GO
CC GO:0005740 mitochondrial envelope IEP Predicted GO
CC GO:0005751 mitochondrial respiratory chain complex IV IEP Predicted GO
BP GO:0006123 mitochondrial electron transport, cytochrome c to oxygen IEP Predicted GO
BP GO:0006778 porphyrin-containing compound metabolic process IEP Predicted GO
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Predicted GO
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to ER IEP Predicted GO
MF GO:0008483 transaminase activity IEP Predicted GO
BP GO:0009060 aerobic respiration IEP Predicted GO
CC GO:0009523 photosystem II IEP Predicted GO
CC GO:0009654 photosystem II oxygen evolving complex IEP Predicted GO
BP GO:0010564 regulation of cell cycle process IEP Predicted GO
BP GO:0015980 energy derivation by oxidation of organic compounds IEP Predicted GO
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Predicted GO
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Predicted GO
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Predicted GO
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP Predicted GO
MF GO:0016831 carboxy-lyase activity IEP Predicted GO
MF GO:0016859 cis-trans isomerase activity IEP Predicted GO
BP GO:0018193 peptidyl-amino acid modification IEP Predicted GO
BP GO:0018208 peptidyl-proline modification IEP Predicted GO
BP GO:0019646 aerobic electron transport chain IEP Predicted GO
MF GO:0019842 vitamin binding IEP Predicted GO
CC GO:0019898 extrinsic component of membrane IEP Predicted GO
BP GO:0022900 electron transport chain IEP Predicted GO
BP GO:0022904 respiratory electron transport chain IEP Predicted GO
MF GO:0030170 pyridoxal phosphate binding IEP Predicted GO
CC GO:0031967 organelle envelope IEP Predicted GO
CC GO:0031975 envelope IEP Predicted GO
BP GO:0032465 regulation of cytokinesis IEP Predicted GO
BP GO:0032954 regulation of cytokinetic process IEP Predicted GO
BP GO:0032955 regulation of division septum assembly IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0033013 tetrapyrrole metabolic process IEP Predicted GO
BP GO:0033014 tetrapyrrole biosynthetic process IEP Predicted GO
MF GO:0042586 peptide deformylase activity IEP Predicted GO
BP GO:0044087 regulation of cellular component biogenesis IEP Predicted GO
CC GO:0044425 membrane part IEP Predicted GO
CC GO:0044429 mitochondrial part IEP Predicted GO
CC GO:0044455 mitochondrial membrane part IEP Predicted GO
CC GO:0045277 respiratory chain complex IV IEP Predicted GO
BP GO:0045333 cellular respiration IEP Predicted GO
BP GO:0048193 Golgi vesicle transport IEP Predicted GO
MF GO:0050662 coenzyme binding IEP Predicted GO
BP GO:0051128 regulation of cellular component organization IEP Predicted GO
BP GO:0051301 cell division IEP Predicted GO
BP GO:0051302 regulation of cell division IEP Predicted GO
BP GO:0051726 regulation of cell cycle IEP Predicted GO
BP GO:0055114 oxidation-reduction process IEP Predicted GO
CC GO:0070069 cytochrome complex IEP Predicted GO
MF GO:0070279 vitamin B6 binding IEP Predicted GO
CC GO:0098796 membrane protein complex IEP Predicted GO
CC GO:0098798 mitochondrial protein complex IEP Predicted GO
CC GO:0098800 inner mitochondrial membrane protein complex IEP Predicted GO
CC GO:0098803 respiratory chain complex IEP Predicted GO
BP GO:1901891 regulation of cell septum assembly IEP Predicted GO
CC GO:1990204 oxidoreductase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR001328 Pept_tRNA_hydro 54 233
No external refs found!