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  5. Seita.5G281700.1

Seita.5G281700.1


Description : component *(Symplekin/Pta1) of Cleavage and Polyadenylation Specificity Factor (CPSF) complex


Gene families : OG_42_0002144 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002144_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.5G281700.1
Cluster HCAA Clusters: Cluster_76

Target Alias Description ECC score Gene Family Method Actions
442688 No alias HEAT repeat-containing protein 0.03 Orthogroups_2024-Update
A4A49_08221 No alias hypothetical protein 0.03 Orthogroups_2024-Update
Bradi1g16570 No alias HEAT repeat-containing protein 0.05 Orthogroups_2024-Update
Bradi2g47267 No alias Function unknown 0.1 Orthogroups_2024-Update
Brara.B00024.1 No alias component *(Symplekin/Pta1) of Cleavage and... 0.03 Orthogroups_2024-Update
Cre02.g099200 No alias HEAT repeat-containing protein 0.02 Orthogroups_2024-Update
Glyma.01G121400 No alias HEAT repeat-containing protein 0.04 Orthogroups_2024-Update
Glyma.04G089400 No alias Function unknown 0.05 Orthogroups_2024-Update
Glyma.06G091300 No alias Function unknown 0.05 Orthogroups_2024-Update
HORVU2Hr1G013790.2 No alias component *(Symplekin/Pta1) of Cleavage and... 0.04 Orthogroups_2024-Update
PSME_00002892-RA No alias (at5g01400 : 185.0) Encodes a Symplekin/Pta1 homologue... 0.02 Orthogroups_2024-Update
Sobic.002G430300.1 No alias component *(Symplekin/Pta1) of Cleavage and... 0.03 Orthogroups_2024-Update
Sopen04g030560 No alias Symplekin tight junction protein C terminal 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP Predicted GO
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP Predicted GO
MF GO:0004842 ubiquitin-protein transferase activity IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP Predicted GO
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
CC GO:0016459 myosin complex IEP Predicted GO
MF GO:0019787 ubiquitin-like protein transferase activity IEP Predicted GO
MF GO:0031625 ubiquitin protein ligase binding IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0042393 histone binding IEP Predicted GO
MF GO:0044389 ubiquitin-like protein ligase binding IEP Predicted GO
CC GO:0044430 cytoskeletal part IEP Predicted GO
CC GO:0044459 plasma membrane part IEP Predicted GO
BP GO:0051726 regulation of cell cycle IEP Predicted GO
MF GO:0071949 FAD binding IEP Predicted GO
CC GO:0098797 plasma membrane protein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR022075 Symplekin_C 1052 1230
IPR032460 Symplekin/Pta1_N 72 288
No external refs found!