1. Home
  2. Species
  3. Setaria italica
  4. Sequence
  5. Seita.5G282700.1

Seita.5G282700.1


Description : subfamily ABCB transporter


Gene families : OG_42_0000040 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000040_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.5G282700.1
Cluster HCAA Clusters: Cluster_200

Target Alias Description ECC score Gene Family Method Actions
139408 No alias P-glycoprotein 20 0.03 Orthogroups_2024-Update
408755 No alias P-glycoprotein 18 0.02 Orthogroups_2024-Update
A4A49_01823 No alias putative abc transporter b family member 8 0.03 Orthogroups_2024-Update
Brara.I00328.1 No alias subfamily ABCB transporter 0.03 Orthogroups_2024-Update
Glyma.08G342600 No alias ABC transporter family protein 0.03 Orthogroups_2024-Update
Glyma.13G118900 No alias P-glycoprotein 11 0.03 Orthogroups_2024-Update
HORVU0Hr1G015570.6 No alias subfamily ABCB transporter 0.03 Orthogroups_2024-Update
HORVU3Hr1G068650.8 No alias subfamily ABCB transporter 0.03 Orthogroups_2024-Update
LOC_Os02g09720 No alias multidrug resistance protein, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os05g47490 No alias MDR-like ABC transporter, putative, expressed 0.02 Orthogroups_2024-Update
MA_635039g0010 No alias (at1g02520 : 559.0) P-glycoprotein 11 (PGP11); FUNCTIONS... 0.03 Orthogroups_2024-Update
Mp2g11920.1 No alias subfamily ABCB transporter 0.02 Orthogroups_2024-Update
Mp7g04390.1 No alias subfamily ABCB transporter 0.02 Orthogroups_2024-Update
PSME_00004142-RA No alias (q6yuu5|mdr_orysa : 1178.0) Putative multidrug... 0.03 Orthogroups_2024-Update
PSME_00016714-RA No alias (q6yuu5|mdr_orysa : 1107.0) Putative multidrug... 0.03 Orthogroups_2024-Update
PSME_00023028-RA No alias (at3g28345 : 1461.0) ABC transporter family protein;... 0.04 Orthogroups_2024-Update
PSME_00037351-RA No alias (at3g28345 : 1429.0) ABC transporter family protein;... 0.03 Orthogroups_2024-Update
Potri.001G139700 No alias P-glycoprotein 2 0.03 Orthogroups_2024-Update
Seita.2G374400.1 No alias subfamily ABCB transporter 0.05 Orthogroups_2024-Update
Seita.3G160100.1 No alias subfamily ABCB transporter 0.04 Orthogroups_2024-Update
Solyc07g064120 No alias ABC transporter B family protein (AHRD V3.3 *** G7JF16_MEDTR) 0.04 Orthogroups_2024-Update
Sopen06g004020 No alias ABC transporter transmembrane region 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA 16Dec
CC GO:0016020 membrane IEA 16Dec
BP GO:0055085 transmembrane transport IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000439 transcription factor TFIIH core complex IEP Predicted GO
MF GO:0001671 ATPase activator activity IEP Predicted GO
MF GO:0004061 arylformamidase activity IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005667 transcription factor complex IEP Predicted GO
BP GO:0006289 nucleotide-excision repair IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0006568 tryptophan metabolic process IEP Predicted GO
BP GO:0006569 tryptophan catabolic process IEP Predicted GO
BP GO:0006576 cellular biogenic amine metabolic process IEP Predicted GO
BP GO:0006586 indolalkylamine metabolic process IEP Predicted GO
MF GO:0008047 enzyme activator activity IEP Predicted GO
MF GO:0008519 ammonium transmembrane transporter activity IEP Predicted GO
BP GO:0009063 cellular amino acid catabolic process IEP Predicted GO
BP GO:0009072 aromatic amino acid family metabolic process IEP Predicted GO
BP GO:0009074 aromatic amino acid family catabolic process IEP Predicted GO
BP GO:0009308 amine metabolic process IEP Predicted GO
BP GO:0009310 amine catabolic process IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
BP GO:0015696 ammonium transport IEP Predicted GO
BP GO:0016054 organic acid catabolic process IEP Predicted GO
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Predicted GO
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
BP GO:0019441 tryptophan catabolic process to kynurenine IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
BP GO:0042180 cellular ketone metabolic process IEP Predicted GO
BP GO:0042402 cellular biogenic amine catabolic process IEP Predicted GO
BP GO:0042430 indole-containing compound metabolic process IEP Predicted GO
BP GO:0042436 indole-containing compound catabolic process IEP Predicted GO
BP GO:0042537 benzene-containing compound metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
BP GO:0044106 cellular amine metabolic process IEP Predicted GO
BP GO:0044282 small molecule catabolic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
CC GO:0044798 nuclear transcription factor complex IEP Predicted GO
BP GO:0046218 indolalkylamine catabolic process IEP Predicted GO
BP GO:0046395 carboxylic acid catabolic process IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Predicted GO
MF GO:0060590 ATPase regulator activity IEP Predicted GO
BP GO:0070189 kynurenine metabolic process IEP Predicted GO
BP GO:0072488 ammonium transmembrane transport IEP Predicted GO
BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
CC GO:0090575 RNA polymerase II transcription factor complex IEP Predicted GO
BP GO:1901565 organonitrogen compound catabolic process IEP Predicted GO
BP GO:1901606 alpha-amino acid catabolic process IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR011527 ABC1_TM_dom 56 328
IPR011527 ABC1_TM_dom 710 983
IPR003439 ABC_transporter-like 1050 1200
IPR003439 ABC_transporter-like 395 544
No external refs found!