1. Home
  2. Species
  3. Setaria italica
  4. Sequence
  5. Seita.5G283600.1

Seita.5G283600.1


Description : subfamily ABCB transporter


Gene families : OG_42_0000040 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000040_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.5G283600.1
Cluster HCAA Clusters: Cluster_148

Target Alias Description ECC score Gene Family Method Actions
123915 No alias P-glycoprotein 11 0.02 Orthogroups_2024-Update
A4A49_00814 No alias abc transporter b family member 4 0.05 Orthogroups_2024-Update
A4A49_02254 No alias abc transporter b family member 11 0.03 Orthogroups_2024-Update
At3g28360 No alias ABC transporter B family member 16... 0.04 Orthogroups_2024-Update
Bradi2g47337 No alias ATP binding cassette subfamily B4 0.02 Orthogroups_2024-Update
Brara.I00320.1 No alias subfamily ABCB transporter 0.05 Orthogroups_2024-Update
GRMZM2G315375 No alias ATP binding cassette subfamily B1 0.02 Orthogroups_2024-Update
GRMZM5G833207 No alias ATP binding cassette subfamily B4 0.04 Orthogroups_2024-Update
Glyma.16G078100 No alias ABC transporter family protein 0.02 Orthogroups_2024-Update
HORVU3Hr1G068650.8 No alias subfamily ABCB transporter 0.04 Orthogroups_2024-Update
LOC_Os01g18670 No alias MDR-like ABC transporter, putative, expressed 0.04 Orthogroups_2024-Update
LOC_Os04g54930 No alias ABC transporter, ATP-binding protein, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os05g47500 No alias MDR-like ABC transporter, putative, expressed 0.02 Orthogroups_2024-Update
MA_10436810g0020 No alias (at3g28345 : 992.0) ABC transporter family protein;... 0.06 Orthogroups_2024-Update
MA_107576g0010 No alias (q6yuu5|mdr_orysa : 852.0) Putative multidrug resistance... 0.05 Orthogroups_2024-Update
MA_138894g0010 No alias (at2g47000 : 1332.0) Multidrug resistance ... 0.03 Orthogroups_2024-Update
MA_18863g0010 No alias (at2g47000 : 769.0) Multidrug resistance P-glycoprotein... 0.05 Orthogroups_2024-Update
MA_6870g0010 No alias (q6yuu5|mdr_orysa : 1284.0) Putative multidrug... 0.08 Orthogroups_2024-Update
MA_83806g0010 No alias (q6yuu5|mdr_orysa : 1360.0) Putative multidrug... 0.06 Orthogroups_2024-Update
PSME_00016535-RA No alias (at3g28860 : 1775.0) Belongs to the family of... 0.04 Orthogroups_2024-Update
PSME_00017831-RA No alias (at2g47000 : 822.0) Multidrug resistance P-glycoprotein... 0.04 Orthogroups_2024-Update
PSME_00023263-RA No alias (q6yuu5|mdr_orysa : 1044.0) Putative multidrug... 0.05 Orthogroups_2024-Update
PSME_00023264-RA No alias (q6yuu5|mdr_orysa : 1318.0) Putative multidrug... 0.05 Orthogroups_2024-Update
PSME_00028351-RA No alias (at1g02520 : 748.0) P-glycoprotein 11 (PGP11); FUNCTIONS... 0.04 Orthogroups_2024-Update
PSME_00030174-RA No alias (at2g47000 : 1538.0) Multidrug resistance ... 0.03 Orthogroups_2024-Update
PSME_00031965-RA No alias (q6yuu5|mdr_orysa : 1268.0) Putative multidrug... 0.03 Orthogroups_2024-Update
PSME_00035518-RA No alias (at2g39480 : 1505.0) P-glycoprotein 6 (PGP6); FUNCTIONS... 0.02 Orthogroups_2024-Update
PSME_00038380-RA No alias (q6yuu5|mdr_orysa : 1204.0) Putative multidrug... 0.06 Orthogroups_2024-Update
PSME_00039058-RA No alias (q6yuu5|mdr_orysa : 1225.0) Putative multidrug... 0.04 Orthogroups_2024-Update
PSME_00042040-RA No alias (at3g28345 : 1318.0) ABC transporter family protein;... 0.02 Orthogroups_2024-Update
Potri.014G113500 No alias P-glycoprotein 21 0.03 Orthogroups_2024-Update
Seita.1G280600.1 No alias subfamily ABCB transporter 0.04 Orthogroups_2024-Update
Seita.5G189700.1 No alias subfamily ABCB transporter 0.06 Orthogroups_2024-Update
Seita.5G283500.1 No alias subfamily ABCB transporter 0.04 Orthogroups_2024-Update
Solyc06g009290 No alias ABC transporter B family protein (AHRD V3.3 *** G7IBR0_MEDTR) 0.02 Orthogroups_2024-Update
Sopen09g003060 No alias ABC transporter transmembrane region 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA 16Dec
CC GO:0016020 membrane IEA 16Dec
BP GO:0055085 transmembrane transport IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEP Predicted GO
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
MF GO:0003849 3-deoxy-7-phosphoheptulonate synthase activity IEP Predicted GO
MF GO:0003885 D-arabinono-1,4-lactone oxidase activity IEP Predicted GO
BP GO:0008652 cellular amino acid biosynthetic process IEP Predicted GO
BP GO:0009072 aromatic amino acid family metabolic process IEP Predicted GO
BP GO:0009073 aromatic amino acid family biosynthetic process IEP Predicted GO
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Predicted GO
MF GO:0016899 oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor IEP Predicted GO
MF GO:0030246 carbohydrate binding IEP Predicted GO
MF GO:0030976 thiamine pyrophosphate binding IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
MF GO:1901681 sulfur compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR011527 ABC1_TM_dom 17 245
IPR011527 ABC1_TM_dom 628 898
IPR003439 ABC_transporter-like 313 461
IPR003439 ABC_transporter-like 969 1117
No external refs found!