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  5. Seita.5G295700.1

Seita.5G295700.1


Description : Unknown function


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.5G295700.1
Cluster HCAA Clusters: Cluster_87

Target Alias Description ECC score Gene Family Method Actions
89230 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
At2g17210 No alias Pentatricopeptide repeat-containing protein At2g17210... 0.03 Orthogroups_2024-Update
At4g31070 No alias Pentatricopeptide repeat-containing protein At4g31070,... 0.05 Orthogroups_2024-Update
Bradi1g03670 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Orthogroups_2024-Update
Bradi3g03440 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 Orthogroups_2024-Update
Bradi3g04890 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.06 Orthogroups_2024-Update
Bradi5g12970 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Brara.D02088.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Brara.E00818.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Brara.F03861.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Brara.G03165.1 No alias RNA editing factor *(OTP87) 0.04 Orthogroups_2024-Update
Glyma.08G172502 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
HORVU3Hr1G061600.1 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU6Hr1G010120.6 No alias Unknown function 0.06 Orthogroups_2024-Update
MA_183278g0010 No alias (at3g12770 : 619.0) Encodes a pentatricopeptide repeat... 0.04 Orthogroups_2024-Update
MA_210823g0010 No alias (at4g37170 : 594.0) Pentatricopeptide repeat (PPR)... 0.02 Orthogroups_2024-Update
MA_36643g0010 No alias (at3g03580 : 738.0) Tetratricopeptide repeat (TPR)-like... 0.02 Orthogroups_2024-Update
PSME_00031833-RA No alias (at3g13770 : 501.0) Pentatricopeptide repeat (PPR)... 0.05 Orthogroups_2024-Update
PSME_00052953-RA No alias (at4g13650 : 635.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
PSME_00055422-RA No alias (at2g13600 : 420.0) Pentatricopeptide repeat (PPR)... 0.02 Orthogroups_2024-Update
PSME_00056424-RA No alias (at2g22070 : 461.0) pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
PSME_00057046-RA No alias (at4g18750 : 592.0) Encodes a pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
Potri.001G186500 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Seita.2G203300.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Sobic.001G033600.2 No alias Unknown function 0.05 Orthogroups_2024-Update
Solyc03g096610 No alias Pentatricopeptide repeat (PPR) superfamily protein (AHRD... 0.03 Orthogroups_2024-Update
Solyc03g119120 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc11g017290 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.04 Orthogroups_2024-Update
evm.model.contig_4456.11 No alias (at5g61990 : 169.0) Pentatricopeptide repeat (PPR)... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003677 DNA binding IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 355 380
IPR002885 Pentatricopeptide_repeat 459 481
IPR002885 Pentatricopeptide_repeat 154 179
IPR002885 Pentatricopeptide_repeat 123 146
IPR002885 Pentatricopeptide_repeat 279 327
IPR002885 Pentatricopeptide_repeat 382 427
IPR002885 Pentatricopeptide_repeat 181 228
No external refs found!