Seita.5G298400.1

Description : E3 ubiquitin ligase *(CHY)

Gene families : OG_42_0001040 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001040_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria italica: Seita.5G298400.1
Cluster	HCAA Clusters: Cluster_12

Target	Alias	Description	ECC score	Gene Family Method	Actions
Sobic.003G278500.1	No alias	E3 ubiquitin ligase *(CHY)	0.03	Orthogroups_2024-Update
Sopen06g019610	No alias	Zinc-ribbon	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	IEA	16Dec
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003723	RNA binding	IEP	Predicted GO
MF	GO:0003743	translation initiation factor activity	IEP	Predicted GO
MF	GO:0008081	phosphoric diester hydrolase activity	IEP	Predicted GO
MF	GO:0008135	translation factor activity, RNA binding	IEP	Predicted GO
CC	GO:0016020	membrane	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR039512	RCHY1_zinc-ribbon	244	300
IPR001841	Znf_RING	196	239
IPR008913	Znf_CHY	61	142

External Links

No external refs found!