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  5. Seita.5G301000.1

Seita.5G301000.1


Description : regulatory protein *(RGG) of mRNA quality control


Gene families : OG_42_0001353 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001353_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.5G301000.1
Cluster HCAA Clusters: Cluster_108

Target Alias Description ECC score Gene Family Method Actions
Bradi2g48500 No alias Hyaluronan / mRNA binding family 0.03 Orthogroups_2024-Update
Brara.C04556.1 No alias regulatory protein *(RGG) of mRNA quality control 0.03 Orthogroups_2024-Update
Brara.H00932.1 No alias regulatory protein *(RGG) of mRNA quality control 0.04 Orthogroups_2024-Update
GRMZM2G173805 No alias Hyaluronan / mRNA binding family 0.03 Orthogroups_2024-Update
Glyma.03G110300 No alias Hyaluronan / mRNA binding family 0.03 Orthogroups_2024-Update
Glyma.07G114600 No alias Hyaluronan / mRNA binding family 0.04 Orthogroups_2024-Update
HORVU1Hr1G080980.2 No alias regulatory protein *(RGG) of mRNA quality control 0.03 Orthogroups_2024-Update
LOC_Os01g41880 No alias hyaluronan/mRNA binding family domain containing... 0.03 Orthogroups_2024-Update
Pp1s456_22V6 No alias contains ESTs AU070561(S3985),D23584(C3044) [Oryza... 0.03 Orthogroups_2024-Update
Solyc08g007220 No alias Nuclear RNA binding protein-like (AHRD V3.3 *** Q38M48_SOLTU) 0.03 Orthogroups_2024-Update
Sopen08g003170 No alias Hyaluronan / mRNA binding family 0.02 Orthogroups_2024-Update
Sopen08g003180 No alias Hyaluronan / mRNA binding family 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Start
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003746 translation elongation factor activity IEP Predicted GO
MF GO:0004146 dihydrofolate reductase activity IEP Predicted GO
CC GO:0005741 mitochondrial outer membrane IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
BP GO:0006575 cellular modified amino acid metabolic process IEP Predicted GO
BP GO:0006760 folic acid-containing compound metabolic process IEP Predicted GO
BP GO:0009396 folic acid-containing compound biosynthetic process IEP Predicted GO
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Predicted GO
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP Predicted GO
CC GO:0019867 outer membrane IEP Predicted GO
CC GO:0031090 organelle membrane IEPPredicted GO
CC GO:0031966 mitochondrial membrane IEP Predicted GO
CC GO:0031968 organelle outer membrane IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
BP GO:0042398 cellular modified amino acid biosynthetic process IEP Predicted GO
BP GO:0042558 pteridine-containing compound metabolic process IEP Predicted GO
BP GO:0042559 pteridine-containing compound biosynthetic process IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0046653 tetrahydrofolate metabolic process IEP Predicted GO
BP GO:0046654 tetrahydrofolate biosynthetic process IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
CC GO:0098588 bounding membrane of organelle IEP Predicted GO
CC GO:0098805 whole membrane IEP Predicted GO
MF GO:1990380 Lys48-specific deubiquitinase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR006861 HABP4_PAIRBP1-bd 159 269
IPR019084 Stm1-like_N 1 78
No external refs found!