Seita.5G301700.1

Description : component *(eS24) of small ribosomal-subunit (SSU) proteome

Gene families : OG_42_0001483 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001483_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria italica: Seita.5G301700.1
Cluster	HCAA Clusters: Cluster_75

Target	Alias	Description	ECC score	Gene Family Method
271584	No alias	Ribosomal protein S24e family protein	0.07	Orthogroups_2024-Update
A4A49_64768	No alias	40s ribosomal protein s24-1	0.07	Orthogroups_2024-Update
At3g04920	No alias	40S ribosomal protein S24-1...	0.03	Orthogroups_2024-Update
Bradi3g08680	No alias	Ribosomal protein S24e family protein	0.04	Orthogroups_2024-Update
Brara.A03743.1	No alias	component *(eS24) of small ribosomal-subunit (SSU) proteome	0.04	Orthogroups_2024-Update
Brara.B03525.1	No alias	component *(eS24) of small ribosomal-subunit (SSU) proteome	0.06	Orthogroups_2024-Update
Brara.E03413.1	No alias	component *(eS24) of small ribosomal-subunit (SSU) proteome	0.04	Orthogroups_2024-Update
Brara.F02892.1	No alias	component *(eS24) of small ribosomal-subunit (SSU) proteome	0.06	Orthogroups_2024-Update
Brara.I00438.1	No alias	component *(eS24) of small ribosomal-subunit (SSU) proteome	0.11	Orthogroups_2024-Update
Cre10.g456200	No alias	Ribosomal protein S24e family protein	0.06	Orthogroups_2024-Update
GRMZM2G151252	No alias	Ribosomal protein S24e family protein	0.1	Orthogroups_2024-Update
GRMZM2G171426	No alias	Ribosomal protein S24e family protein	0.04	Orthogroups_2024-Update
Glyma.03G245300	No alias	Ribosomal protein S24e family protein	0.06	Orthogroups_2024-Update
Glyma.10G160300	No alias	Ribosomal protein S24e family protein	0.1	Orthogroups_2024-Update
Glyma.19G242700	No alias	Ribosomal protein S24e family protein	0.05	Orthogroups_2024-Update
Glyma.20G228100	No alias	Ribosomal protein S24e family protein	0.04	Orthogroups_2024-Update
HORVU6Hr1G044840.1	No alias	component *(eS24) of small ribosomal-subunit (SSU) proteome	0.05	Orthogroups_2024-Update
HORVU7Hr1G088580.1	No alias	component *(eS24) of small ribosomal-subunit (SSU) proteome	0.03	Orthogroups_2024-Update
Kfl00638_0040	kfl00638_0040_v1.1	(at3g04920 : 195.0) Ribosomal protein S24e family...	0.02	Orthogroups_2024-Update
LOC_Os02g13530	No alias	40S ribosomal protein S24, putative, expressed	0.04	Orthogroups_2024-Update
LOC_Os06g36160	No alias	40S ribosomal protein S24, putative, expressed	0.04	Orthogroups_2024-Update
MA_119894g0010	No alias	(at3g04920 : 188.0) Ribosomal protein S24e family...	0.06	Orthogroups_2024-Update
PSME_00005358-RA	No alias	(at3g04920 : 189.0) Ribosomal protein S24e family...	0.05	Orthogroups_2024-Update
PSME_00019619-RA	No alias	(at3g04920 : 187.0) Ribosomal protein S24e family...	0.03	Orthogroups_2024-Update
Potri.013G036100	No alias	Ribosomal protein S24e family protein	0.06	Orthogroups_2024-Update
Pp1s204_49V6	No alias	40s ribosomal protein	0.06	Orthogroups_2024-Update
Pp1s37_112V6	No alias	40s ribosomal protein	0.04	Orthogroups_2024-Update
Pp1s450_3V6	No alias	40s ribosomal protein	0.02	Orthogroups_2024-Update
Pp1s450_9V6	No alias	40s ribosomal protein	0.06	Orthogroups_2024-Update
Seita.1G028300.1	No alias	component *(eS24) of small ribosomal-subunit (SSU) proteome	0.03	Orthogroups_2024-Update
Sobic.003G280700.1	No alias	component *(eS24) of small ribosomal-subunit (SSU) proteome	0.13	Orthogroups_2024-Update
Sobic.004G099500.1	No alias	component *(eS24) of small ribosomal-subunit (SSU) proteome	0.07	Orthogroups_2024-Update
Sobic.010G166100.1	No alias	component *(eS24) of small ribosomal-subunit (SSU) proteome	0.07	Orthogroups_2024-Update
Solyc06g084230	No alias	40S ribosomal protein S24 (AHRD V3.3 *** K4CUG0_SOLLC)	0.05	Orthogroups_2024-Update
Solyc09g065330	No alias	40S ribosomal protein S24 (AHRD V3.3 *** K4CAS8_SOLLC)	0.09	Orthogroups_2024-Update
Sopen09g027090	No alias	Ribosomal protein S24e	0.08	Orthogroups_2024-Update
evm.model.contig_2036.17	No alias	(at3g04920 : 137.0) Ribosomal protein S24e family...	0.12	Orthogroups_2024-Update
evm.model.tig00000361.64	No alias	(at3g04920 : 129.0) Ribosomal protein S24e family...	0.08	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	16Dec
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	16Dec
BP	GO:0006412	translation	IEA	16Dec
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	Predicted GO
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	Predicted GO
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	Predicted GO
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	Predicted GO
MF	GO:0003676	nucleic acid binding	IEP	Predicted GO
MF	GO:0003723	RNA binding	IEP	Predicted GO
MF	GO:0003746	translation elongation factor activity	IEP	Predicted GO
MF	GO:0004190	aspartic-type endopeptidase activity	IEP	Predicted GO
MF	GO:0004576	oligosaccharyl transferase activity	IEP	Predicted GO
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	Predicted GO
MF	GO:0005524	ATP binding	IEP	Predicted GO
CC	GO:0005681	spliceosomal complex	IEP	Predicted GO
CC	GO:0005789	endoplasmic reticulum membrane	IEP	Predicted GO
BP	GO:0006082	organic acid metabolic process	IEP	Predicted GO
BP	GO:0006399	tRNA metabolic process	IEP	Predicted GO
BP	GO:0006413	translational initiation	IEP	Predicted GO
BP	GO:0006414	translational elongation	IEP	Predicted GO
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	Predicted GO
BP	GO:0006486	protein glycosylation	IEP	Predicted GO
BP	GO:0006487	protein N-linked glycosylation	IEP	Predicted GO
BP	GO:0006520	cellular amino acid metabolic process	IEP	Predicted GO
MF	GO:0008097	5S rRNA binding	IEP	Predicted GO
MF	GO:0008135	translation factor activity, RNA binding	IEP	Predicted GO
MF	GO:0008144	drug binding	IEP	Predicted GO
CC	GO:0008250	oligosaccharyltransferase complex	IEP	Predicted GO
BP	GO:0016070	RNA metabolic process	IEP	Predicted GO
MF	GO:0016747	transferase activity, transferring acyl groups other than amino-acyl groups	IEP	Predicted GO
MF	GO:0016874	ligase activity	IEP	Predicted GO
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	Predicted GO
MF	GO:0017076	purine nucleotide binding	IEP	Predicted GO
BP	GO:0018196	peptidyl-asparagine modification	IEP	Predicted GO
BP	GO:0018279	protein N-linked glycosylation via asparagine	IEP	Predicted GO
BP	GO:0019752	carboxylic acid metabolic process	IEP	Predicted GO
MF	GO:0019843	rRNA binding	IEP	Predicted GO
CC	GO:0019867	outer membrane	IEP	Predicted GO
MF	GO:0030554	adenyl nucleotide binding	IEP	Predicted GO
MF	GO:0032553	ribonucleotide binding	IEP	Predicted GO
MF	GO:0032555	purine ribonucleotide binding	IEP	Predicted GO
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Predicted GO
BP	GO:0034660	ncRNA metabolic process	IEP	Predicted GO
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Predicted GO
MF	GO:0036094	small molecule binding	IEP	Predicted GO
BP	GO:0043038	amino acid activation	IEP	Predicted GO
BP	GO:0043039	tRNA aminoacylation	IEP	Predicted GO
MF	GO:0043168	anion binding	IEP	Predicted GO
BP	GO:0043413	macromolecule glycosylation	IEP	Predicted GO
BP	GO:0043436	oxoacid metabolic process	IEP	Predicted GO
CC	GO:0044422	organelle part	IEP	Predicted GO
CC	GO:0044432	endoplasmic reticulum part	IEP	Predicted GO
CC	GO:0044446	intracellular organelle part	IEP	Predicted GO
MF	GO:0070001	aspartic-type peptidase activity	IEP	Predicted GO
BP	GO:0070085	glycosylation	IEP	Predicted GO
MF	GO:0097159	organic cyclic compound binding	IEP	Predicted GO
MF	GO:0097367	carbohydrate derivative binding	IEP	Predicted GO
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Predicted GO
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	Predicted GO
MF	GO:1901265	nucleoside phosphate binding	IEP	Predicted GO
MF	GO:1901363	heterocyclic compound binding	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001976	Ribosomal_S24e	29	107

External Links

No external refs found!

Seita.5G301700.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation