Seita.5G302200.1


Description : subfamily ABCB transporter


Gene families : OG_42_0000040 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000040_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.5G302200.1
Cluster HCAA Clusters: Cluster_38

Target Alias Description ECC score Gene Family Method Actions
123915 No alias P-glycoprotein 11 0.03 Orthogroups_2024-Update
139408 No alias P-glycoprotein 20 0.02 Orthogroups_2024-Update
231714 No alias P-glycoprotein 17 0.03 Orthogroups_2024-Update
408755 No alias P-glycoprotein 18 0.02 Orthogroups_2024-Update
A4A49_06562 No alias abc transporter b family member 15 0.03 Orthogroups_2024-Update
Bradi2g47400 No alias ATP binding cassette subfamily B4 0.02 Orthogroups_2024-Update
Brara.D00408.1 No alias subfamily ABCB transporter 0.02 Orthogroups_2024-Update
Brara.I00320.1 No alias subfamily ABCB transporter 0.03 Orthogroups_2024-Update
Brara.I02993.1 No alias subfamily ABCB transporter 0.03 Orthogroups_2024-Update
Cre17.g725200 No alias P-glycoprotein 21 0.02 Orthogroups_2024-Update
GRMZM2G004748 No alias P-glycoprotein 2 0.03 Orthogroups_2024-Update
GRMZM2G025860 No alias ABC transporter family protein 0.03 Orthogroups_2024-Update
Glyma.01G008200 No alias ABC transporter family protein 0.03 Orthogroups_2024-Update
Glyma.01G016500 No alias P-glycoprotein 2 0.03 Orthogroups_2024-Update
Glyma.14G220200 No alias P-glycoprotein 13 0.03 Orthogroups_2024-Update
Glyma.19G184300 No alias ATP binding cassette subfamily B1 0.04 Orthogroups_2024-Update
HORVU6Hr1G067200.1 No alias subfamily ABCB transporter 0.03 Orthogroups_2024-Update
HORVU7Hr1G063020.3 No alias subfamily ABCB transporter 0.04 Orthogroups_2024-Update
Kfl00461_0020 kfl00461_0020_v1.1 (at3g28860 : 1090.0) Belongs to the family of... 0.03 Orthogroups_2024-Update
MA_62683g0010 No alias (at2g36910 : 1072.0) Belongs to the family of... 0.03 Orthogroups_2024-Update
PSME_00017831-RA No alias (at2g47000 : 822.0) Multidrug resistance P-glycoprotein... 0.02 Orthogroups_2024-Update
PSME_00023484-RA No alias (at2g36910 : 1766.0) Belongs to the family of... 0.05 Orthogroups_2024-Update
PSME_00027754-RA No alias (at2g47000 : 1521.0) Multidrug resistance ... 0.02 Orthogroups_2024-Update
PSME_00035545-RA No alias (q6yuu5|mdr_orysa : 1259.0) Putative multidrug... 0.03 Orthogroups_2024-Update
Potri.002G019600 No alias P-glycoprotein 13 0.02 Orthogroups_2024-Update
Potri.003G094400 No alias P-glycoprotein 2 0.02 Orthogroups_2024-Update
Pp1s29_108V6 No alias multidrug pheromone mdr abc transporter family 0.02 Orthogroups_2024-Update
Seita.3G054200.1 No alias subfamily ABCB transporter 0.03 Orthogroups_2024-Update
Seita.5G283500.1 No alias subfamily ABCB transporter 0.04 Orthogroups_2024-Update
Sobic.009G034500.1 No alias subfamily ABCB transporter 0.03 Orthogroups_2024-Update
Solyc03g005860 No alias ABC transporter B family protein (AHRD V3.3 *** G7ILW7_MEDTR) 0.03 Orthogroups_2024-Update
Solyc06g009280 No alias ABC transporter B family protein (AHRD V3.3 *** G7IBR0_MEDTR) 0.03 Orthogroups_2024-Update
Solyc08g076720 No alias ABC transporter B family-like protein (AHRD V3.3 ***... 0.02 Orthogroups_2024-Update
Solyc12g098870 No alias ABC transporter B family protein (AHRD V3.3 *** G7IBR0_MEDTR) 0.03 Orthogroups_2024-Update
Sopen12g023550 No alias ABC transporter 0.02 Orthogroups_2024-Update
evm.model.tig00000741.4 No alias (at3g62150 : 432.0) P-glycoprotein 21 (PGP21); FUNCTIONS... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA 16Dec
CC GO:0016020 membrane IEA 16Dec
BP GO:0055085 transmembrane transport IEA 16Dec
Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP Predicted GO
BP GO:0000271 polysaccharide biosynthetic process IEP Predicted GO
MF GO:0003824 catalytic activity IEP Predicted GO
MF GO:0004568 chitinase activity IEP Predicted GO
MF GO:0004673 protein histidine kinase activity IEP Predicted GO
MF GO:0005215 transporter activity IEP Predicted GO
MF GO:0005337 nucleoside transmembrane transporter activity IEP Predicted GO
BP GO:0005976 polysaccharide metabolic process IEP Predicted GO
BP GO:0005985 sucrose metabolic process IEP Predicted GO
BP GO:0006022 aminoglycan metabolic process IEP Predicted GO
BP GO:0006026 aminoglycan catabolic process IEP Predicted GO
BP GO:0006030 chitin metabolic process IEP Predicted GO
BP GO:0006032 chitin catabolic process IEP Predicted GO
BP GO:0006040 amino sugar metabolic process IEP Predicted GO
BP GO:0006073 cellular glucan metabolic process IEP Predicted GO
BP GO:0006720 isoprenoid metabolic process IEP Predicted GO
BP GO:0006721 terpenoid metabolic process IEP Predicted GO
MF GO:0008061 chitin binding IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
MF GO:0008194 UDP-glycosyltransferase activity IEP Predicted GO
MF GO:0008236 serine-type peptidase activity IEP Predicted GO
BP GO:0008299 isoprenoid biosynthetic process IEP Predicted GO
MF GO:0008661 1-deoxy-D-xylulose-5-phosphate synthase activity IEP Predicted GO
BP GO:0009250 glucan biosynthetic process IEP Predicted GO
BP GO:0015858 nucleoside transport IEP Predicted GO
BP GO:0015931 nucleobase-containing compound transport IEP Predicted GO
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP Predicted GO
BP GO:0016051 carbohydrate biosynthetic process IEP Predicted GO
BP GO:0016114 terpenoid biosynthetic process IEP Predicted GO
MF GO:0016157 sucrose synthase activity IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0016744 transferase activity, transferring aldehyde or ketonic groups IEP Predicted GO
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Predicted GO
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Predicted GO
MF GO:0016759 cellulose synthase activity IEP Predicted GO
MF GO:0016760 cellulose synthase (UDP-forming) activity IEP Predicted GO
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Predicted GO
BP GO:0016998 cell wall macromolecule catabolic process IEP Predicted GO
MF GO:0017171 serine hydrolase activity IEP Predicted GO
MF GO:0022857 transmembrane transporter activity IEP Predicted GO
BP GO:0030243 cellulose metabolic process IEP Predicted GO
BP GO:0030244 cellulose biosynthetic process IEP Predicted GO
MF GO:0030976 thiamine pyrophosphate binding IEP Predicted GO
BP GO:0033692 cellular polysaccharide biosynthetic process IEP Predicted GO
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Predicted GO
MF GO:0035251 UDP-glucosyltransferase activity IEP Predicted GO
BP GO:0042737 drug catabolic process IEP Predicted GO
BP GO:0044036 cell wall macromolecule metabolic process IEP Predicted GO
BP GO:0044042 glucan metabolic process IEP Predicted GO
BP GO:0044262 cellular carbohydrate metabolic process IEP Predicted GO
BP GO:0044264 cellular polysaccharide metabolic process IEP Predicted GO
BP GO:0046348 amino sugar catabolic process IEP Predicted GO
MF GO:0046527 glucosyltransferase activity IEP Predicted GO
BP GO:0051273 beta-glucan metabolic process IEP Predicted GO
BP GO:0051274 beta-glucan biosynthetic process IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
BP GO:1901071 glucosamine-containing compound metabolic process IEP Predicted GO
BP GO:1901072 glucosamine-containing compound catabolic process IEP Predicted GO
BP GO:1901136 carbohydrate derivative catabolic process IEP Predicted GO
BP GO:1901264 carbohydrate derivative transport IEP Predicted GO
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP Predicted GO
BP GO:1901642 nucleoside transmembrane transport IEP Predicted GO
MF GO:1901681 sulfur compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR011527 ABC1_TM_dom 53 312
IPR011527 ABC1_TM_dom 673 941
IPR003439 ABC_transporter-like 382 531
IPR003439 ABC_transporter-like 1013 1162
No external refs found!