Seita.5G321300.1

Description : ARF-type transcription factor

Gene families : OG_42_0000050 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000050_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria italica: Seita.5G321300.1
Cluster	HCAA Clusters: Cluster_168

Target	Alias	Description	ECC score	Gene Family Method
424113	No alias	auxin response factor 6	0.03	Orthogroups_2024-Update
A4A49_15968	No alias	auxin response factor 6	0.03	Orthogroups_2024-Update
Bradi4g17410	No alias	auxin response factor 2	0.03	Orthogroups_2024-Update
HORVU2Hr1G109650.18	No alias	ARF-type transcription factor	0.04	Orthogroups_2024-Update
HORVU7Hr1G096460.13	No alias	ARF-type transcription factor & auxin signal mediator...	0.03	Orthogroups_2024-Update
LOC_Os12g29520	No alias	auxin response factor, putative, expressed	0.02	Orthogroups_2024-Update
PSME_00020341-RA	No alias	(at1g19220 : 630.0) Encodes an auxin response factor...	0.03	Orthogroups_2024-Update
Potri.002G207050	No alias	auxin response factor 2	0.03	Orthogroups_2024-Update
Potri.010G223200	No alias	auxin response factor 16	0.03	Orthogroups_2024-Update
Potri.015G105300	No alias	auxin response factor 2	0.03	Orthogroups_2024-Update
Sobic.006G262100.1	No alias	ARF-type transcription factor	0.05	Orthogroups_2024-Update
Sobic.009G196900.1	No alias	ARF-type transcription factor	0.05	Orthogroups_2024-Update
Sopen02g011920	No alias	Auxin response factor	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	16Dec
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	16Dec
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	16Dec
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	IEA	16Dec
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEP	Predicted GO
MF	GO:0003700	DNA-binding transcription factor activity	IEP	Predicted GO
MF	GO:0004222	metalloendopeptidase activity	IEP	Predicted GO
MF	GO:0005544	calcium-dependent phospholipid binding	IEP	Predicted GO
BP	GO:0006334	nucleosome assembly	IEP	Predicted GO
CC	GO:0032993	protein-DNA complex	IEP	Predicted GO
BP	GO:0034728	nucleosome organization	IEP	Predicted GO
CC	GO:0044427	chromosomal part	IEP	Predicted GO
CC	GO:0044815	DNA packaging complex	IEP	Predicted GO
BP	GO:0065004	protein-DNA complex assembly	IEP	Predicted GO
BP	GO:0071824	protein-DNA complex subunit organization	IEP	Predicted GO
MF	GO:0140110	transcription regulator activity	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR003340	B3_DNA-bd	128	229
IPR010525	Auxin_resp	258	334

External Links

No external refs found!

Seita.5G321300.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation