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  5. Seita.5G344400.1

Seita.5G344400.1


Description : pectin methylesterase


Gene families : OG_42_0000066 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000066_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.5G344400.1
Cluster HCAA Clusters: Cluster_16

Target Alias Description ECC score Gene Family Method Actions
A4A49_40928 No alias putative pectinesterasepectinesterase inhibitor 40 0.04 Orthogroups_2024-Update
Bradi1g16780 No alias Plant invertase/pectin methylesterase inhibitor superfamily 0.02 Orthogroups_2024-Update
Brara.I03256.1 No alias EC_3.1 hydrolase acting on ester bond & pectin methylesterase 0.02 Orthogroups_2024-Update
LOC_Os01g21034 No alias pectinesterase, putative, expressed 0.02 Orthogroups_2024-Update
MA_10435891g0010 No alias (o04887|pme2_citsi : 389.0) Pectinesterase-2 precursor... 0.06 Orthogroups_2024-Update
MA_130858g0010 No alias (at5g53370 : 416.0) pectin methylesterase PCR fragment F... 0.02 Orthogroups_2024-Update
MA_51464g0010 No alias (at4g02330 : 470.0) ATPMEPCRB; FUNCTIONS IN:... 0.02 Orthogroups_2024-Update
PSME_00048380-RA No alias (at4g02330 : 476.0) ATPMEPCRB; FUNCTIONS IN:... 0.02 Orthogroups_2024-Update
PSME_00056054-RA No alias (at4g02330 : 471.0) ATPMEPCRB; FUNCTIONS IN:... 0.05 Orthogroups_2024-Update
Pp1s258_34V6 No alias Pectinesterase-2 precursor (Pectin methylesterase) (PE)... 0.02 Orthogroups_2024-Update
Sobic.002G251600.1 No alias EC_3.1 hydrolase acting on ester bond & pectin methylesterase 0.04 Orthogroups_2024-Update
Solyc03g083840 No alias Pectinesterase (AHRD V3.3 *** K4BIF9_SOLLC) 0.03 Orthogroups_2024-Update
Sopen01g021780 No alias Pectinesterase 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004857 enzyme inhibitor activity IEA 16Dec
MF GO:0030599 pectinesterase activity IEA 16Dec
BP GO:0042545 cell wall modification IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0008017 microtubule binding IEP Predicted GO
MF GO:0015631 tubulin binding IEP Predicted GO
InterPro domains Description Start Stop
IPR000070 Pectinesterase_cat 354 442
IPR000070 Pectinesterase_cat 139 286
IPR006501 Pectinesterase_inhib_dom 28 90
No external refs found!