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  5. Seita.5G388400.1

Seita.5G388400.1


Description : substrate adaptor component *(CSA) of CUL4-DDB1 E3 ubiquitin ligase complex


Gene families : OG_42_0005917 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005917_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.5G388400.1
Cluster HCAA Clusters: Cluster_107

Target Alias Description ECC score Gene Family Method Actions
266832 No alias Transducin/WD40 repeat-like superfamily protein 0.02 Orthogroups_2024-Update
At1g27840 No alias Transducin/WD40 repeat-like superfamily protein... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
BP GO:0006354 DNA-templated transcription, elongation IEP Predicted GO
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEP Predicted GO
BP GO:0006897 endocytosis IEP Predicted GO
BP GO:0006914 autophagy IEP Predicted GO
CC GO:0008023 transcription elongation factor complex IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
BP GO:0016043 cellular component organization IEP Predicted GO
BP GO:0016569 covalent chromatin modification IEP Predicted GO
BP GO:0016570 histone modification IEP Predicted GO
CC GO:0016593 Cdc73/Paf1 complex IEP Predicted GO
BP GO:0018208 peptidyl-proline modification IEP Predicted GO
MF GO:0032182 ubiquitin-like protein binding IEP Predicted GO
MF GO:0043130 ubiquitin binding IEP Predicted GO
BP GO:0043248 proteasome assembly IEP Predicted GO
BP GO:0061919 process utilizing autophagic mechanism IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO
BP GO:0098657 import into cell IEP Predicted GO
MF GO:0140096 catalytic activity, acting on a protein IEP Predicted GO
InterPro domains Description Start Stop
IPR001680 WD40_repeat 388 423
IPR001680 WD40_repeat 182 219
IPR001680 WD40_repeat 305 336
No external refs found!