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  5. Seita.5G389100.1

Seita.5G389100.1


Description : C2H2 subclass WIP transcription factor


Gene families : OG_42_0000614 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000614_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.5G389100.1
Cluster HCAA Clusters: Cluster_177

Target Alias Description ECC score Gene Family Method Actions
Brara.E02114.1 No alias C2H2 subclass WIP transcription factor 0.03 Orthogroups_2024-Update
Glyma.02G099100 No alias C2H2-like zinc finger protein 0.04 Orthogroups_2024-Update
Glyma.10G204300 No alias C2H2-like zinc finger protein 0.02 Orthogroups_2024-Update
Glyma.12G057000 No alias WIP domain protein 5 0.03 Orthogroups_2024-Update
Glyma.15G273400 No alias C2H2-type zinc finger family protein 0.03 Orthogroups_2024-Update
LOC_Os06g40960 No alias ZOS6-05 - C2H2 zinc finger protein, expressed 0.02 Orthogroups_2024-Update
MA_3555g0010 No alias (at1g13290 : 341.0) Encodes a putative zinc finger... 0.02 Orthogroups_2024-Update
Potri.002G098200 No alias C2H2 and C2HC zinc fingers superfamily protein 0.02 Orthogroups_2024-Update
Potri.010G129000 No alias C2H2-like zinc finger protein 0.02 Orthogroups_2024-Update
Pp1s359_44V6 No alias transparent testa 1 0.03 Orthogroups_2024-Update
Sobic.003G363200.1 No alias C2H2 subclass WIP transcription factor 0.04 Orthogroups_2024-Update
Solyc01g087050 No alias Protein TRANSPARENT TESTA 1 (AHRD V3.3 *** A0A0B2QDT4_GLYSO) 0.05 Orthogroups_2024-Update
Solyc05g009770 No alias Protein TRANSPARENT TESTA 1-like protein (AHRD V3.3 ***... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000723 telomere maintenance IEP Predicted GO
MF GO:0003678 DNA helicase activity IEP Predicted GO
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
BP GO:0032200 telomere organization IEP Predicted GO
BP GO:0042592 homeostatic process IEP Predicted GO
BP GO:0060249 anatomical structure homeostasis IEP Predicted GO
BP GO:0065007 biological regulation IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!