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Description : component *(uL1) of large ribosomal-subunit (LSU) proteome
Gene families : OG_42_0001635 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001635_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Setaria italica: Seita.5G389700.1 | |
| Cluster | HCAA Clusters: Cluster_138 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| 230302 | No alias | Ribosomal protein L1p/L10e family | 0.15 | Orthogroups_2024-Update | |
| A4A49_21782 | No alias | 60s ribosomal protein l10a-1 | 0.13 | Orthogroups_2024-Update | |
| At5g22440 | No alias | 60S ribosomal protein L10a-3... | 0.05 | Orthogroups_2024-Update | |
| Bradi2g55600 | No alias | Ribosomal protein L1p/L10e family | 0.07 | Orthogroups_2024-Update | |
| Bradi3g42800 | No alias | Ribosomal protein L1p/L10e family | 0.1 | Orthogroups_2024-Update | |
| Brara.B00972.1 | No alias | component *(uL1) of large ribosomal-subunit (LSU) proteome | 0.04 | Orthogroups_2024-Update | |
| Brara.C01003.1 | No alias | component *(uL1) of large ribosomal-subunit (LSU) proteome | 0.22 | Orthogroups_2024-Update | |
| Brara.D01641.1 | No alias | component *(uL1) of large ribosomal-subunit (LSU) proteome | 0.18 | Orthogroups_2024-Update | |
| Brara.G01318.1 | No alias | component *(uL1) of large ribosomal-subunit (LSU) proteome | 0.08 | Orthogroups_2024-Update | |
| Brara.J01470.1 | No alias | component *(uL1) of large ribosomal-subunit (LSU) proteome | 0.13 | Orthogroups_2024-Update | |
| Cre02.g101350 | No alias | Ribosomal protein L1p/L10e family | 0.15 | Orthogroups_2024-Update | |
| Glyma.11G231000 | No alias | Ribosomal protein L1p/L10e family | 0.07 | Orthogroups_2024-Update | |
| Glyma.12G184900 | No alias | Ribosomal protein L1p/L10e family | 0.08 | Orthogroups_2024-Update | |
| Glyma.13G316400 | No alias | Ribosomal protein L1p/L10e family | 0.19 | Orthogroups_2024-Update | |
| Glyma.18G026100 | No alias | Ribosomal protein L1p/L10e family | 0.19 | Orthogroups_2024-Update | |
| Glyma.19G194922 | No alias | Ribosomal protein L1p/L10e family | 0.07 | Orthogroups_2024-Update | |
| HORVU3Hr1G084310.1 | No alias | component *(uL1) of large ribosomal-subunit (LSU) proteome | 0.07 | Orthogroups_2024-Update | |
| HORVU4Hr1G001350.5 | No alias | component *(uL1) of large ribosomal-subunit (LSU) proteome | 0.08 | Orthogroups_2024-Update | |
| HORVU7Hr1G059090.5 | No alias | component *(uL1) of large ribosomal-subunit (LSU) proteome | 0.12 | Orthogroups_2024-Update | |
| Kfl00440_0070 | kfl00440_0070_v1.... | (at2g27530 : 310.0) Encodes ribosomal protein L10aP.... | 0.11 | Orthogroups_2024-Update | |
| LOC_Os02g21660 | No alias | L1P family of ribosomal proteins domain containing... | 0.05 | Orthogroups_2024-Update | |
| MA_12000g0010 | No alias | (at5g22440 : 343.0) Ribosomal protein L1p/L10e family;... | 0.04 | Orthogroups_2024-Update | |
| MA_71921g0010 | No alias | (at1g08360 : 345.0) Ribosomal protein L1p/L10e family;... | 0.14 | Orthogroups_2024-Update | |
| Mp3g07650.1 | No alias | component RPL10a of LSU proteome component | 0.09 | Orthogroups_2024-Update | |
| Mp3g07870.1 | No alias | component RPL10a of LSU proteome component | 0.02 | Orthogroups_2024-Update | |
| PSME_00037360-RA | No alias | (at1g08360 : 341.0) Ribosomal protein L1p/L10e family;... | 0.09 | Orthogroups_2024-Update | |
| Potri.004G202766 | No alias | Ribosomal protein L1p/L10e family | 0.03 | Orthogroups_2024-Update | |
| Potri.004G202832 | No alias | Ribosomal protein L1p/L10e family | 0.09 | Orthogroups_2024-Update | |
| Potri.007G034800 | No alias | Ribosomal protein L1p/L10e family | 0.11 | Orthogroups_2024-Update | |
| Potri.007G035600 | No alias | Ribosomal protein L1p/L10e family | 0.04 | Orthogroups_2024-Update | |
| Pp1s18_121V6 | No alias | 60s ribosomal protein l10a-1 | 0.11 | Orthogroups_2024-Update | |
| Pp1s40_297V6 | No alias | 60s ribosomal protein l10a-1 | 0.11 | Orthogroups_2024-Update | |
| Seita.6G243700.1 | No alias | component *(uL1) of large ribosomal-subunit (LSU) proteome | 0.05 | Orthogroups_2024-Update | |
| Sobic.003G363800.2 | No alias | component *(uL1) of large ribosomal-subunit (LSU) proteome | 0.16 | Orthogroups_2024-Update | |
| Solyc01g009520 | No alias | Ribosomal protein (AHRD V3.3 *** K4ATE8_SOLLC) | 0.12 | Orthogroups_2024-Update | |
| Solyc06g074300 | No alias | 5'-3' exonuclease family protein (AHRD V3.3 --* AT3G28030.4) | 0.17 | Orthogroups_2024-Update | |
| Solyc11g068420 | No alias | Ribosomal protein (AHRD V3.3 *** M1CHW0_SOLTU) | 0.15 | Orthogroups_2024-Update | |
| Sopen01g005070 | No alias | Ribosomal protein L1p/L10e family | 0.22 | Orthogroups_2024-Update | |
| Sopen06g030750 | No alias | Ribosomal protein L1p/L10e family | 0.16 | Orthogroups_2024-Update | |
| Sopen11g027130 | No alias | Ribosomal protein L1p/L10e family | 0.14 | Orthogroups_2024-Update | |
| evm.model.contig_2315.2 | No alias | (at2g27530 : 237.0) Encodes ribosomal protein L10aP.... | 0.25 | Orthogroups_2024-Update | |
| evm.model.tig00020697.31 | No alias | (at5g22440 : 146.0) Ribosomal protein L1p/L10e family;... | 0.02 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003674 | molecular_function | IEP | Predicted GO |
| MF | GO:0003723 | RNA binding | IEP | Predicted GO |
| MF | GO:0003735 | structural constituent of ribosome | IEP | Predicted GO |
| MF | GO:0003746 | translation elongation factor activity | IEP | Predicted GO |
| MF | GO:0004019 | adenylosuccinate synthase activity | IEP | Predicted GO |
| MF | GO:0004605 | phosphatidate cytidylyltransferase activity | IEP | Predicted GO |
| MF | GO:0005198 | structural molecule activity | IEP | Predicted GO |
| CC | GO:0005575 | cellular_component | IEP | Predicted GO |
| CC | GO:0005742 | mitochondrial outer membrane translocase complex | IEP | Predicted GO |
| CC | GO:0005840 | ribosome | IEP | Predicted GO |
| BP | GO:0006334 | nucleosome assembly | IEP | Predicted GO |
| BP | GO:0006412 | translation | IEP | Predicted GO |
| BP | GO:0006414 | translational elongation | IEP | Predicted GO |
| BP | GO:0006518 | peptide metabolic process | IEP | Predicted GO |
| BP | GO:0006655 | phosphatidylglycerol biosynthetic process | IEP | Predicted GO |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | Predicted GO |
| BP | GO:0006839 | mitochondrial transport | IEP | Predicted GO |
| MF | GO:0008135 | translation factor activity, RNA binding | IEP | Predicted GO |
| BP | GO:0008150 | biological_process | IEP | Predicted GO |
| BP | GO:0008152 | metabolic process | IEP | Predicted GO |
| BP | GO:0009058 | biosynthetic process | IEP | Predicted GO |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | Predicted GO |
| BP | GO:0009987 | cellular process | IEP | Predicted GO |
| BP | GO:0017038 | protein import | IEP | Predicted GO |
| BP | GO:0019538 | protein metabolic process | IEP | Predicted GO |
| CC | GO:0019867 | outer membrane | IEP | Predicted GO |
| BP | GO:0030150 | protein import into mitochondrial matrix | IEP | Predicted GO |
| BP | GO:0032048 | cardiolipin metabolic process | IEP | Predicted GO |
| BP | GO:0032049 | cardiolipin biosynthetic process | IEP | Predicted GO |
| CC | GO:0032991 | protein-containing complex | IEP | Predicted GO |
| BP | GO:0033365 | protein localization to organelle | IEP | Predicted GO |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Predicted GO |
| BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | Predicted GO |
| BP | GO:0034728 | nucleosome organization | IEP | Predicted GO |
| BP | GO:0043043 | peptide biosynthetic process | IEP | Predicted GO |
| BP | GO:0043170 | macromolecule metabolic process | IEP | Predicted GO |
| CC | GO:0043226 | organelle | IEP | Predicted GO |
| CC | GO:0043228 | non-membrane-bounded organelle | IEP | Predicted GO |
| CC | GO:0043229 | intracellular organelle | IEP | Predicted GO |
| CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | Predicted GO |
| BP | GO:0043603 | cellular amide metabolic process | IEP | Predicted GO |
| BP | GO:0043604 | amide biosynthetic process | IEP | Predicted GO |
| BP | GO:0044237 | cellular metabolic process | IEP | Predicted GO |
| BP | GO:0044238 | primary metabolic process | IEP | Predicted GO |
| BP | GO:0044249 | cellular biosynthetic process | IEP | Predicted GO |
| BP | GO:0044260 | cellular macromolecule metabolic process | IEP | Predicted GO |
| BP | GO:0044267 | cellular protein metabolic process | IEP | Predicted GO |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | Predicted GO |
| CC | GO:0044424 | intracellular part | IEP | Predicted GO |
| CC | GO:0044444 | cytoplasmic part | IEP | Predicted GO |
| CC | GO:0044455 | mitochondrial membrane part | IEP | Predicted GO |
| CC | GO:0044464 | cell part | IEP | Predicted GO |
| BP | GO:0044743 | protein transmembrane import into intracellular organelle | IEP | Predicted GO |
| BP | GO:0045017 | glycerolipid biosynthetic process | IEP | Predicted GO |
| BP | GO:0046471 | phosphatidylglycerol metabolic process | IEP | Predicted GO |
| BP | GO:0046474 | glycerophospholipid biosynthetic process | IEP | Predicted GO |
| BP | GO:0065002 | intracellular protein transmembrane transport | IEP | Predicted GO |
| BP | GO:0065004 | protein-DNA complex assembly | IEP | Predicted GO |
| MF | GO:0070567 | cytidylyltransferase activity | IEP | Predicted GO |
| BP | GO:0070585 | protein localization to mitochondrion | IEP | Predicted GO |
| BP | GO:0071704 | organic substance metabolic process | IEP | Predicted GO |
| BP | GO:0071806 | protein transmembrane transport | IEP | Predicted GO |
| BP | GO:0071824 | protein-DNA complex subunit organization | IEP | Predicted GO |
| BP | GO:0072594 | establishment of protein localization to organelle | IEP | Predicted GO |
| BP | GO:0072655 | establishment of protein localization to mitochondrion | IEP | Predicted GO |
| BP | GO:0090407 | organophosphate biosynthetic process | IEP | Predicted GO |
| CC | GO:0098799 | outer mitochondrial membrane protein complex | IEP | Predicted GO |
| BP | GO:1901564 | organonitrogen compound metabolic process | IEP | Predicted GO |
| BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | Predicted GO |
| BP | GO:1901576 | organic substance biosynthetic process | IEP | Predicted GO |
| MF | GO:1990380 | Lys48-specific deubiquitinase activity | IEP | Predicted GO |
| BP | GO:1990542 | mitochondrial transmembrane transport | IEP | Predicted GO |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR028364 | Ribosomal_L1/biogenesis | 23 | 210 |
| No external refs found! |