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  5. Seita.5G402900.1

Seita.5G402900.1


Description : Unknown function


Gene families : OG_42_0000148 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000148_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.5G402900.1
Cluster HCAA Clusters: Cluster_185

Target Alias Description ECC score Gene Family Method Actions
Cre16.g647602 No alias chromatin remodeling 1 0.02 Orthogroups_2024-Update
Pp1s338_32V6 No alias chromodomain helicase dna binding protein 3 0.02 Orthogroups_2024-Update
evm.model.tig00020848.66 No alias (at2g44980 : 201.0) SNF2 domain-containing protein /... 0.01 Orthogroups_2024-Update
evm.model.tig00021275.25 No alias (q7g8y3|isw2_orysa : 367.0) Probable chromatin... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0005216 ion channel activity IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
CC GO:0016020 membrane IEP Predicted GO
CC GO:0019867 outer membrane IEP Predicted GO
MF GO:0022838 substrate-specific channel activity IEP Predicted GO
MF GO:0030599 pectinesterase activity IEP Predicted GO
BP GO:0042545 cell wall modification IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
BP GO:0045229 external encapsulating structure organization IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
BP GO:0071555 cell wall organization IEP Predicted GO
InterPro domains Description Start Stop
IPR000330 SNF2_N 590 864
IPR023780 Chromo_domain 479 529
IPR001650 Helicase_C 887 1000
No external refs found!