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  5. Seita.5G412000.1

Seita.5G412000.1


Description : E3 ubiquitin ligase


Gene families : OG_42_0000370 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000370_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.5G412000.1
Cluster HCAA Clusters: Cluster_168

Target Alias Description ECC score Gene Family Method Actions
A4A49_38890 No alias hypothetical protein 0.02 Orthogroups_2024-Update
MA_10433939g0010 No alias (at3g47550 : 264.0) RING/FYVE/PHD zinc finger... 0.03 Orthogroups_2024-Update
MA_75863g0010 No alias (at2g01275 : 87.0) RING/FYVE/PHD zinc finger superfamily... 0.02 Orthogroups_2024-Update
Seita.5G026700.1 No alias E3 ubiquitin ligase 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0004334 fumarylacetoacetase activity IEP Predicted GO
BP GO:0009072 aromatic amino acid family metabolic process IEP Predicted GO
MF GO:0016822 hydrolase activity, acting on acid carbon-carbon bonds IEP Predicted GO
MF GO:0016823 hydrolase activity, acting on acid carbon-carbon bonds, in ketonic substances IEP Predicted GO
MF GO:0043565 sequence-specific DNA binding IEP Predicted GO
InterPro domains Description Start Stop
IPR011016 Znf_RING-CH 35 80
IPR022143 DUF3675 86 201
No external refs found!