Seita.5G413500.1

Description : component *(uL18) of large ribosomal-subunit (LSU) proteome

Gene families : OG_42_0001609 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001609_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria italica: Seita.5G413500.1
Cluster	HCAA Clusters: Cluster_75

Target	Alias	Description	ECC score	Gene Family Method
144921	No alias	ribosomal protein L5	0.07	Orthogroups_2024-Update
A4A49_19400	No alias	60s ribosomal protein l5	0.08	Orthogroups_2024-Update
At3g25520	No alias	RPL5A [Source:UniProtKB/TrEMBL;Acc:A0A178V891]	0.03	Orthogroups_2024-Update
At5g39740	No alias	RPL5B [Source:UniProtKB/TrEMBL;Acc:A0A178UJU5]	0.04	Orthogroups_2024-Update
Bradi1g13630	No alias	ribosomal protein L5 B	0.09	Orthogroups_2024-Update
Bradi4g13640	No alias	ribosomal protein L5	0.14	Orthogroups_2024-Update
Bradi5g09500	No alias	ribosomal protein L5 B	0.07	Orthogroups_2024-Update
Brara.C04001.1	No alias	component *(uL18) of large ribosomal-subunit (LSU) proteome	0.19	Orthogroups_2024-Update
Brara.C04002.1	No alias	component *(uL18) of large ribosomal-subunit (LSU) proteome	0.17	Orthogroups_2024-Update
Brara.F03014.1	No alias	component *(uL18) of large ribosomal-subunit (LSU) proteome	0.11	Orthogroups_2024-Update
Brara.G00424.1	No alias	component *(uL18) of large ribosomal-subunit (LSU) proteome	0.15	Orthogroups_2024-Update
Cre14.g621450	No alias	ribosomal protein L5 B	0.1	Orthogroups_2024-Update
GRMZM5G815894	No alias	ribosomal protein L5	0.03	Orthogroups_2024-Update
Glyma.07G059900	No alias	ribosomal protein L5 B	0.06	Orthogroups_2024-Update
Glyma.07G060000	No alias	ribosomal protein L5 B	0.09	Orthogroups_2024-Update
Glyma.13G280200	No alias	ribosomal protein L5 B	0.04	Orthogroups_2024-Update
Glyma.13G280300	No alias	ribosomal protein L5 B	0.07	Orthogroups_2024-Update
Glyma.16G028800	No alias	ribosomal protein L5 B	0.06	Orthogroups_2024-Update
HORVU2Hr1G073320.1	No alias	component *(uL18) of large ribosomal-subunit (LSU) proteome	0.08	Orthogroups_2024-Update
HORVU5Hr1G092630.1	No alias	component *(uL18) of large ribosomal-subunit (LSU) proteome	0.13	Orthogroups_2024-Update
LOC_Os01g67134	No alias	ribosomal L18p/L5e family protein, putative, expressed	0.04	Orthogroups_2024-Update
MA_70965g0010	No alias	(q6unt2\|rl5_cucsa : 417.0) 60S ribosomal protein L5 -...	0.05	Orthogroups_2024-Update
Mp4g15800.1	No alias	component RPL5 of LSU proteome component	0.04	Orthogroups_2024-Update
Potri.014G174000	No alias	ribosomal protein L5 B	0.08	Orthogroups_2024-Update
Potri.019G099000	No alias	ribosomal protein L5 B	0.07	Orthogroups_2024-Update
Pp1s364_3V6	No alias	ribosomal protein	0.08	Orthogroups_2024-Update
Pp1s38_329V6	No alias	ribosomal protein	0.06	Orthogroups_2024-Update
Pp1s97_115V6	No alias	ribosomal protein	0.1	Orthogroups_2024-Update
Sobic.003G387900.1	No alias	component *(uL18) of large ribosomal-subunit (LSU) proteome	0.22	Orthogroups_2024-Update
Solyc06g007670	No alias	60S ribosomal protein L5 (AHRD V3.3 *** RL5_CUCSA)	0.13	Orthogroups_2024-Update
Solyc06g082870	No alias	60S ribosomal protein L5-like protein (AHRD V3.3 ***...	0.12	Orthogroups_2024-Update
Solyc09g020130	No alias	60S ribosomal protein L5 (AHRD V3.3 *** RL5_CUCSA)	0.05	Orthogroups_2024-Update
Sopen06g034230	No alias	Ribosomal L18p/L5e family	0.07	Orthogroups_2024-Update
Sopen09g013020	No alias	Ribosomal L18p/L5e family	0.02	Orthogroups_2024-Update
evm.model.contig_3443.5	No alias	(q6unt2\|rl5_cucsa : 302.0) 60S ribosomal protein L5 -...	0.1	Orthogroups_2024-Update
evm.model.tig00000194.49	No alias	(o65353\|rl5_helan : 322.0) 60S ribosomal protein L5 -...	0.06	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	16Dec
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	16Dec
BP	GO:0006412	translation	IEA	16Dec
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
MF	GO:0008097	5S rRNA binding	IEA	16Dec
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019843	rRNA binding	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	Predicted GO
BP	GO:0002097	tRNA wobble base modification	IEP	Predicted GO
BP	GO:0002098	tRNA wobble uridine modification	IEP	Predicted GO
MF	GO:0003697	single-stranded DNA binding	IEP	Predicted GO
MF	GO:0003746	translation elongation factor activity	IEP	Predicted GO
MF	GO:0004176	ATP-dependent peptidase activity	IEP	Predicted GO
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	Predicted GO
MF	GO:0005524	ATP binding	IEP	Predicted GO
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Predicted GO
BP	GO:0006334	nucleosome assembly	IEP	Predicted GO
BP	GO:0006399	tRNA metabolic process	IEP	Predicted GO
BP	GO:0006400	tRNA modification	IEP	Predicted GO
BP	GO:0006414	translational elongation	IEP	Predicted GO
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	Predicted GO
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Predicted GO
MF	GO:0008144	drug binding	IEP	Predicted GO
BP	GO:0016070	RNA metabolic process	IEP	Predicted GO
MF	GO:0016874	ligase activity	IEP	Predicted GO
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	Predicted GO
MF	GO:0017076	purine nucleotide binding	IEP	Predicted GO
MF	GO:0032553	ribonucleotide binding	IEP	Predicted GO
MF	GO:0032555	purine ribonucleotide binding	IEP	Predicted GO
CC	GO:0033588	Elongator holoenzyme complex	IEP	Predicted GO
BP	GO:0034470	ncRNA processing	IEP	Predicted GO
BP	GO:0034660	ncRNA metabolic process	IEP	Predicted GO
BP	GO:0034728	nucleosome organization	IEP	Predicted GO
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Predicted GO
MF	GO:0036094	small molecule binding	IEP	Predicted GO
BP	GO:0043038	amino acid activation	IEP	Predicted GO
BP	GO:0043039	tRNA aminoacylation	IEP	Predicted GO
MF	GO:0043168	anion binding	IEP	Predicted GO
BP	GO:0046483	heterocycle metabolic process	IEP	Predicted GO
BP	GO:0090304	nucleic acid metabolic process	IEP	Predicted GO
MF	GO:0097367	carbohydrate derivative binding	IEP	Predicted GO
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Predicted GO
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	Predicted GO
MF	GO:1901265	nucleoside phosphate binding	IEP	Predicted GO
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR005485	Rbsml_L5_euk/L18_arc	15	176
IPR025607	Rbsml_L5e/L18P_C	236	289

External Links

No external refs found!

Seita.5G413500.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation