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  5. Seita.5G425100.1

Seita.5G425100.1


Description : Unknown function


Gene families : OG_42_0011426 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0011426_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.5G425100.1
Cluster HCAA Clusters: Cluster_191

Target Alias Description ECC score Gene Family Method Actions
Bradi2g58480 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Sobic.003G236150.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Sobic.003G399100.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc01g111430 No alias LOW QUALITY:Pentatricopeptide repeat-containing protein... 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0009507 chloroplast IEP Predicted GO
CC GO:0009536 plastid IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 113 143
IPR002885 Pentatricopeptide_repeat 390 411
IPR002885 Pentatricopeptide_repeat 418 448
IPR002885 Pentatricopeptide_repeat 214 239
IPR002885 Pentatricopeptide_repeat 517 557
No external refs found!