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  5. Seita.5G429600.1

Seita.5G429600.1


Description : auxin efflux transporter *(PIN) & auxin transporter *(PIN)


Gene families : OG_42_0000235 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000235_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Setaria italica: Seita.5G429600.1
Cluster HCAA Clusters: Cluster_212

Target Alias Description ECC score Gene Family Method Actions
At5g16530 No alias Auxin efflux carrier component... 0.05 Orthogroups_2024-Update
Glyma.07G217900 No alias Auxin efflux carrier family protein 0.03 Orthogroups_2024-Update
Sobic.004G240900.1 No alias auxin transporter *(PIN) & auxin efflux transporter *(PIN) 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA 16Dec
BP GO:0055085 transmembrane transport IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP Predicted GO
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006418 tRNA aminoacylation for protein translation IEP Predicted GO
BP GO:0006520 cellular amino acid metabolic process IEP Predicted GO
BP GO:0007165 signal transduction IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0035556 intracellular signal transduction IEP Predicted GO
BP GO:0043038 amino acid activation IEP Predicted GO
BP GO:0043039 tRNA aminoacylation IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
InterPro domains Description Start Stop
IPR004776 Mem_trans 202 341
IPR004776 Mem_trans 10 163
No external refs found!