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  5. Seita.5G432700.1

Seita.5G432700.1


Description : MADS/AGL-type transcription factor


Gene families : OG_42_0000009 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.5G432700.1
Cluster HCAA Clusters: Cluster_13

Target Alias Description ECC score Gene Family Method Actions
A4A49_28440 No alias mads-box protein soc1 0.03 Orthogroups_2024-Update
At1g69120 No alias AP1 [Source:UniProtKB/TrEMBL;Acc:A0A178W846] 0.02 Orthogroups_2024-Update
At3g30260 No alias AGAMOUS-like 79 [Source:UniProtKB/TrEMBL;Acc:Q7X9H6] 0.03 Orthogroups_2024-Update
Brara.B03164.1 No alias regulatory protein *(SEPALLATA) of floral meristem... 0.01 Orthogroups_2024-Update
Brara.G01817.1 No alias MADS/AGL-type transcription factor 0.03 Orthogroups_2024-Update
Brara.I02295.1 No alias MADS/AGL-type transcription factor 0.02 Orthogroups_2024-Update
Brara.I03959.1 No alias MADS/AGL-type transcription factor 0.01 Orthogroups_2024-Update
Brara.J02063.1 No alias MADS/AGL-type transcription factor 0.02 Orthogroups_2024-Update
Glyma.15G058000 No alias K-box region and MADS-box transcription factor family protein 0.02 Orthogroups_2024-Update
Glyma.16G091300 No alias K-box region and MADS-box transcription factor family protein 0.02 Orthogroups_2024-Update
LOC_Os02g06860 No alias OsMADS80 - MADS-box family gene with M-alpha type-box, expressed 0.03 Orthogroups_2024-Update
PSME_00042999-RA No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
Potri.004G010200 No alias AGAMOUS-like 62 0.02 Orthogroups_2024-Update
Potri.009G055700 No alias AGAMOUS-like 15 0.02 Orthogroups_2024-Update
Potri.009G079000 No alias AGAMOUS-like 44 0.02 Orthogroups_2024-Update
Seita.4G160200.1 No alias MADS/AGL-type transcription factor 0.02 Orthogroups_2024-Update
Sopen01g037770 No alias K-box region 0.03 Orthogroups_2024-Update
Sopen01g049040 No alias SRF-type transcription factor (DNA-binding and... 0.04 Orthogroups_2024-Update
Sopen12g029850 No alias SRF-type transcription factor (DNA-binding and... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA 16Dec
MF GO:0046983 protein dimerization activity IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0000723 telomere maintenance IEP Predicted GO
MF GO:0003678 DNA helicase activity IEP Predicted GO
MF GO:0003743 translation initiation factor activity IEP Predicted GO
MF GO:0004386 helicase activity IEP Predicted GO
BP GO:0006281 DNA repair IEP Predicted GO
BP GO:0006413 translational initiation IEP Predicted GO
BP GO:0006886 intracellular protein transport IEP Predicted GO
BP GO:0006974 cellular response to DNA damage stimulus IEP Predicted GO
BP GO:0006996 organelle organization IEP Predicted GO
BP GO:0008104 protein localization IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
BP GO:0015031 protein transport IEP Predicted GO
BP GO:0015833 peptide transport IEP Predicted GO
BP GO:0032200 telomere organization IEP Predicted GO
BP GO:0033036 macromolecule localization IEP Predicted GO
BP GO:0033554 cellular response to stress IEP Predicted GO
BP GO:0040008 regulation of growth IEP Predicted GO
BP GO:0042592 homeostatic process IEP Predicted GO
BP GO:0042886 amide transport IEP Predicted GO
BP GO:0045184 establishment of protein localization IEP Predicted GO
BP GO:0045927 positive regulation of growth IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
BP GO:0048518 positive regulation of biological process IEP Predicted GO
BP GO:0051276 chromosome organization IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
BP GO:0051716 cellular response to stimulus IEP Predicted GO
BP GO:0060249 anatomical structure homeostasis IEP Predicted GO
BP GO:0065008 regulation of biological quality IEP Predicted GO
BP GO:0071705 nitrogen compound transport IEP Predicted GO
MF GO:0140097 catalytic activity, acting on DNA IEP Predicted GO
InterPro domains Description Start Stop
IPR002100 TF_MADSbox 11 58
No external refs found!