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  5. At4g28250

At4g28250


Description : EXPB3 [Source:UniProtKB/TrEMBL;Acc:A0A178USU9]


Gene families : OG_42_0000145 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000145_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At4g28250
Cluster HCCA clusters: Cluster_159

Target Alias Description ECC score Gene Family Method Actions
A4A49_20975 No alias putative expansin-b2 0.03 Orthogroups_2024-Update
Bradi1g78350 No alias expansin B2 0.02 Orthogroups_2024-Update
Bradi3g33160 No alias expansin B2 0.05 Orthogroups_2024-Update
Bradi3g50740 No alias expansin B2 0.07 Orthogroups_2024-Update
Brara.A01798.1 No alias beta-class expansin 0.03 Orthogroups_2024-Update
Brara.G00015.1 No alias beta-class expansin 0.03 Orthogroups_2024-Update
HORVU4Hr1G088080.4 No alias Unknown function 0.03 Orthogroups_2024-Update
MA_10427897g0010 No alias (q7x6j9|exb17_orysa : 304.0) Expansin-B17 precursor... 0.04 Orthogroups_2024-Update
MA_166764g0010 No alias (q7x6j9|exb17_orysa : 194.0) Expansin-B17 precursor... 0.04 Orthogroups_2024-Update
MA_78155g0010 No alias (q7x6j9|exb17_orysa : 256.0) Expansin-B17 precursor... 0.04 Orthogroups_2024-Update
PSME_00003968-RA No alias (q7x6j9|exb17_orysa : 259.0) Expansin-B17 precursor... 0.02 Orthogroups_2024-Update
PSME_00005304-RA No alias (q6h676|exb11_orysa : 186.0) Expansin-B11 precursor... 0.02 Orthogroups_2024-Update
PSME_00008080-RA No alias (q7x6j9|exb17_orysa : 305.0) Expansin-B17 precursor... 0.03 Orthogroups_2024-Update
PSME_00014538-RA No alias (q6h676|exb11_orysa : 160.0) Expansin-B11 precursor... 0.02 Orthogroups_2024-Update
PSME_00024925-RA No alias (q7x6j9|exb17_orysa : 300.0) Expansin-B17 precursor... 0.02 Orthogroups_2024-Update
PSME_00025248-RA No alias (q6h676|exb11_orysa : 171.0) Expansin-B11 precursor... 0.02 Orthogroups_2024-Update
PSME_00039752-RA No alias (q7x6j9|exb17_orysa : 251.0) Expansin-B17 precursor... 0.02 Orthogroups_2024-Update
PSME_00041021-RA No alias (at4g28250 : 171.0) putative beta-expansin/allergen... 0.02 Orthogroups_2024-Update
Potri.019G101900 No alias expansin B3 0.02 Orthogroups_2024-Update
Pp1s100_99V6 No alias beta-expansin 3 0.05 Orthogroups_2024-Update
Pp1s147_37V6 No alias beta-expansin 3 0.03 Orthogroups_2024-Update
Pp1s251_59V6 No alias beta-expansin 3 0.03 Orthogroups_2024-Update
Sobic.001G301500.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.001G301600.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.001G542100.1 No alias Unknown function 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Predicted GO
MF GO:0004506 squalene monooxygenase activity IEP Predicted GO
MF GO:0005506 iron ion binding IEP Predicted GO
BP GO:0005985 sucrose metabolic process IEP Predicted GO
BP GO:0006950 response to stress IEP Predicted GO
BP GO:0006952 defense response IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
MF GO:0016157 sucrose synthase activity IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Predicted GO
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Predicted GO
MF GO:0019842 vitamin binding IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
MF GO:0030170 pyridoxal phosphate binding IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
BP GO:0044262 cellular carbohydrate metabolic process IEP Predicted GO
MF GO:0046527 glucosyltransferase activity IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
MF GO:0050660 flavin adenine dinucleotide binding IEP Predicted GO
MF GO:0050662 coenzyme binding IEP Predicted GO
BP GO:0050896 response to stimulus IEP Predicted GO
BP GO:0055114 oxidation-reduction process IEP Predicted GO
MF GO:0070279 vitamin B6 binding IEP Predicted GO
InterPro domains Description Start Stop
IPR009009 RlpA-like_DPBB 74 152
IPR007117 Expansin_CBD 164 245
No external refs found!