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  5. Seita.5G455200.1

Seita.5G455200.1


Description : Unknown function


Gene families : OG_42_0000452 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000452_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.5G455200.1
Cluster HCAA Clusters: Cluster_113

Target Alias Description ECC score Gene Family Method Actions
180358 No alias Regulator of chromosome condensation (RCC1) family with... 0.02 Orthogroups_2024-Update
At5g12350 No alias Regulator of chromosome condensation (RCC1) family with... 0.03 Orthogroups_2024-Update
Bradi2g26807 No alias Regulator of chromosome condensation (RCC1) family with... 0.03 Orthogroups_2024-Update
Bradi2g39600 No alias Regulator of chromosome condensation (RCC1) family with... 0.03 Orthogroups_2024-Update
Glyma.02G280400 No alias Regulator of chromosome condensation (RCC1) family with... 0.02 Orthogroups_2024-Update
Glyma.20G165400 No alias Regulator of chromosome condensation (RCC1) family with... 0.04 Orthogroups_2024-Update
MA_54149g0010 No alias (at5g42140 : 796.0) Regulator of chromosome condensation... 0.03 Orthogroups_2024-Update
PSME_00001886-RA No alias (at5g19420 : 94.4) Regulator of chromosome condensation... 0.03 Orthogroups_2024-Update
PSME_00003947-RA No alias (at5g19420 : 205.0) Regulator of chromosome condensation... 0.03 Orthogroups_2024-Update
Sobic.003G269400.2 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.003G428100.1 No alias Unknown function 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0004527 exonuclease activity IEP Predicted GO
MF GO:0005244 voltage-gated ion channel activity IEP Predicted GO
MF GO:0005247 voltage-gated chloride channel activity IEP Predicted GO
MF GO:0005253 anion channel activity IEP Predicted GO
MF GO:0005254 chloride channel activity IEP Predicted GO
BP GO:0006821 chloride transport IEP Predicted GO
MF GO:0008308 voltage-gated anion channel activity IEP Predicted GO
MF GO:0008509 anion transmembrane transporter activity IEP Predicted GO
MF GO:0015103 inorganic anion transmembrane transporter activity IEP Predicted GO
MF GO:0015108 chloride transmembrane transporter activity IEP Predicted GO
BP GO:0015698 inorganic anion transport IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0022832 voltage-gated channel activity IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
MF GO:0043531 ADP binding IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR013591 Brevis_radix_dom 1018 1073
IPR027988 BRX_N 912 946
IPR000306 Znf_FYVE 656 722
IPR000408 Reg_chr_condens 267 324
IPR000408 Reg_chr_condens 380 431
IPR000408 Reg_chr_condens 329 377
IPR000408 Reg_chr_condens 499 548
IPR000408 Reg_chr_condens 436 484
IPR000408 Reg_chr_condens 551 600
IPR000408 Reg_chr_condens 605 652
No external refs found!