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  5. Seita.5G470400.1

Seita.5G470400.1


Description : transcription factor *(A/B-GATA)


Gene families : OG_42_0000071 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000071_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.5G470400.1
Cluster HCAA Clusters: Cluster_30

Target Alias Description ECC score Gene Family Method Actions
A4A49_32464 No alias gata transcription factor 18 0.05 Orthogroups_2024-Update
At3g54810 No alias GATA transcription factor [Source:UniProtKB/TrEMBL;Acc:B9DHF1] 0.03 Orthogroups_2024-Update
Brara.A00210.1 No alias transcription factor *(A/B-GATA) 0.03 Orthogroups_2024-Update
Brara.A00355.1 No alias transcription factor *(A/B-GATA) 0.04 Orthogroups_2024-Update
Cre10.g435450 No alias Plant-specific GATA-type zinc finger transcription... 0.01 Orthogroups_2024-Update
Glyma.11G068700 No alias GATA type zinc finger transcription factor family protein 0.05 Orthogroups_2024-Update
HORVU6Hr1G039720.5 No alias transcription factor *(A/B-GATA) 0.03 Orthogroups_2024-Update
Potri.010G001300 No alias GATA transcription factor 15 0.05 Orthogroups_2024-Update
Pp1s121_36V6 No alias gata transcription factor 19 0.03 Orthogroups_2024-Update
Pp1s167_128V6 No alias gata transcription factor 19 0.02 Orthogroups_2024-Update
Seita.3G175200.1 No alias transcription factor *(A/B-GATA) 0.03 Orthogroups_2024-Update
Solyc01g060490 No alias GATA transcription factor, putative (AHRD V3.3 *** B9RZK8_RICCO) 0.02 Orthogroups_2024-Update
Solyc05g056120 No alias GATA transcription factor (AHRD V3.3 *** K4C2T6_SOLLC) 0.03 Orthogroups_2024-Update
Sopen02g029260 No alias GATA zinc finger 0.04 Orthogroups_2024-Update
evm.model.tig00020610.74 No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0006355 regulation of transcription, DNA-templated IEA 16Dec
MF GO:0043565 sequence-specific DNA binding IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0030688 preribosome, small subunit precursor IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
InterPro domains Description Start Stop
IPR000679 Znf_GATA 31 65
No external refs found!