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  5. Seita.6G005200.1

Seita.6G005200.1


Description : storage vacuole protein sorting receptor *(RMR)


Gene families : OG_42_0001930 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001930_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.6G005200.1
Cluster HCAA Clusters: Cluster_31

Target Alias Description ECC score Gene Family Method Actions
67002 No alias Protease-associated (PA) RING/U-box zinc finger family protein 0.02 Orthogroups_2024-Update
Bradi5g04590 No alias receptor homology region transmembrane domain ring H2... 0.01 Orthogroups_2024-Update
LOC_Os03g07130 No alias RING finger protein 13, putative, expressed 0.03 Orthogroups_2024-Update
PSME_00000894-RA No alias (at1g71980 : 166.0) Protease-associated (PA) RING/U-box... 0.03 Orthogroups_2024-Update
Pp1s28_303V6 No alias embr-h2 protein expressed 0.02 Orthogroups_2024-Update
Sobic.006G279900.2 No alias storage vacuole protein sorting receptor *(RMR) 0.03 Orthogroups_2024-Update
Sopen06g023820 No alias Ring finger domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
MF GO:0003917 DNA topoisomerase type I activity IEP Predicted GO
MF GO:0005244 voltage-gated ion channel activity IEP Predicted GO
MF GO:0005247 voltage-gated chloride channel activity IEP Predicted GO
MF GO:0005253 anion channel activity IEP Predicted GO
MF GO:0005254 chloride channel activity IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
BP GO:0006821 chloride transport IEP Predicted GO
MF GO:0008308 voltage-gated anion channel activity IEP Predicted GO
BP GO:0009116 nucleoside metabolic process IEP Predicted GO
BP GO:0009119 ribonucleoside metabolic process IEP Predicted GO
MF GO:0015108 chloride transmembrane transporter activity IEP Predicted GO
BP GO:0015969 guanosine tetraphosphate metabolic process IEP Predicted GO
MF GO:0022832 voltage-gated channel activity IEP Predicted GO
MF GO:0030151 molybdenum ion binding IEP Predicted GO
MF GO:0031072 heat shock protein binding IEP Predicted GO
BP GO:0034035 purine ribonucleoside bisphosphate metabolic process IEP Predicted GO
BP GO:0042278 purine nucleoside metabolic process IEP Predicted GO
MF GO:0043531 ADP binding IEP Predicted GO
BP GO:0046128 purine ribonucleoside metabolic process IEP Predicted GO
BP GO:1901068 guanosine-containing compound metabolic process IEP Predicted GO
BP GO:1901657 glycosyl compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR003137 PA_domain 68 144
IPR001841 Znf_RING 236 279
No external refs found!