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  5. Seita.6G016700.1

Seita.6G016700.1


Description : Unknown function


Gene families : OG_42_0000408 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000408_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.6G016700.1
Cluster HCAA Clusters: Cluster_263

Target Alias Description ECC score Gene Family Method Actions
Bradi3g10830 No alias Core-2/I-branching... 0.03 Orthogroups_2024-Update
GRMZM2G057509 No alias Core-2/I-branching... 0.08 Orthogroups_2024-Update
GRMZM2G110395 No alias Core-2/I-branching... 0.02 Orthogroups_2024-Update
HORVU5Hr1G001380.4 No alias Unknown function 0.02 Orthogroups_2024-Update
LOC_Os01g65490 No alias DNA binding protein, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os12g43880 No alias DNA binding protein, putative, expressed 0.03 Orthogroups_2024-Update
Potri.015G045500 No alias Core-2/I-branching... 0.03 Orthogroups_2024-Update
Pp1s17_310V6 No alias T1N24.19; hypothetical protein [Arabidopsis thaliana] 0.03 Orthogroups_2024-Update
Pp1s270_89V6 No alias T1N24.19; hypothetical protein [Arabidopsis thaliana] 0.02 Orthogroups_2024-Update
Seita.3G404300.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.9G106000.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.004G114500.1 No alias Unknown function 0.06 Orthogroups_2024-Update
Sobic.007G011200.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Solyc05g009110 No alias LOW QUALITY:Core-2/I-branching... 0.03 Orthogroups_2024-Update
Sopen03g038140 No alias Core-2/I-Branching enzyme 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA 16Dec
MF GO:0016757 transferase activity, transferring glycosyl groups IEA 16Dec
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Type GO Term Name Evidence Source
CC GO:0000439 transcription factor TFIIH core complex IEP Predicted GO
CC GO:0005667 transcription factor complex IEP Predicted GO
BP GO:0006289 nucleotide-excision repair IEP Predicted GO
BP GO:0006352 DNA-templated transcription, initiation IEP Predicted GO
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Predicted GO
CC GO:0044798 nuclear transcription factor complex IEP Predicted GO
MF GO:0050662 coenzyme binding IEP Predicted GO
MF GO:0071949 FAD binding IEP Predicted GO
CC GO:0090575 RNA polymerase II transcription factor complex IEP Predicted GO
InterPro domains Description Start Stop
IPR003406 Glyco_trans_14 180 409
No external refs found!