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  5. Seita.6G017200.1

Seita.6G017200.1


Description : component *(uL30) of large ribosomal-subunit (LSU) proteome


Gene families : OG_42_0001114 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001114_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.6G017200.1
Cluster HCAA Clusters: Cluster_85

Target Alias Description ECC score Gene Family Method Actions
103994 No alias Ribosomal protein L30/L7 family protein 0.15 Orthogroups_2024-Update
A4A49_25555 No alias 60s ribosomal protein l7-1 0.05 Orthogroups_2024-Update
A4A49_32887 No alias 60s ribosomal protein l7-1 0.08 Orthogroups_2024-Update
A4A49_59282 No alias 60s ribosomal protein l7-2 0.04 Orthogroups_2024-Update
AC190609.3_FG003 No alias Ribosomal protein L30/L7 family protein 0.04 Orthogroups_2024-Update
At1g80750 No alias 60S ribosomal protein L7-1... 0.05 Orthogroups_2024-Update
At2g01250 No alias 60S ribosomal protein L7-2... 0.05 Orthogroups_2024-Update
At3g13580 No alias Ribosomal protein L30/L7 family protein... 0.07 Orthogroups_2024-Update
Bradi1g04950 No alias Ribosomal protein L30/L7 family protein 0.16 Orthogroups_2024-Update
Bradi5g20900 No alias Ribosomal protein L30/L7 family protein 0.17 Orthogroups_2024-Update
Brara.B02397.1 No alias component *(uL30) of large ribosomal-subunit (LSU) proteome 0.05 Orthogroups_2024-Update
Brara.B03026.1 No alias component *(uL30) of large ribosomal-subunit (LSU) proteome 0.21 Orthogroups_2024-Update
Brara.C02245.1 No alias component *(uL30) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
Brara.D02679.1 No alias component *(uL30) of large ribosomal-subunit (LSU) proteome 0.15 Orthogroups_2024-Update
Brara.F03496.1 No alias component *(uL30) of large ribosomal-subunit (LSU) proteome 0.18 Orthogroups_2024-Update
Brara.G02051.1 No alias component *(uL30) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
Brara.I02011.1 No alias component *(uL30) of large ribosomal-subunit (LSU) proteome 0.17 Orthogroups_2024-Update
Cre12.g537800 No alias Ribosomal protein L30/L7 family protein 0.12 Orthogroups_2024-Update
GRMZM2G107336 No alias Ribosomal protein L30/L7 family protein 0.04 Orthogroups_2024-Update
GRMZM5G868433 No alias Ribosomal protein L30/L7 family protein 0.09 Orthogroups_2024-Update
Glyma.07G020000 No alias Ribosomal protein L30/L7 family protein 0.13 Orthogroups_2024-Update
Glyma.08G222100 No alias Ribosomal protein L30/L7 family protein 0.15 Orthogroups_2024-Update
Glyma.09G061000 No alias Ribosomal protein L30/L7 family protein 0.07 Orthogroups_2024-Update
Glyma.15G167400 No alias Ribosomal protein L30/L7 family protein 0.09 Orthogroups_2024-Update
HORVU2Hr1G100970.4 No alias component *(uL30) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
HORVU5Hr1G108990.2 No alias component *(uL30) of large ribosomal-subunit (LSU) proteome 0.18 Orthogroups_2024-Update
Kfl00380_0050 kfl00380_0050_v1.1 (at2g01250 : 349.0) Ribosomal protein L30/L7 family... 0.08 Orthogroups_2024-Update
LOC_Os04g51630 No alias 60S ribosomal protein L7, putative, expressed 0.03 Orthogroups_2024-Update
MA_109845g0010 No alias (at2g01250 : 278.0) Ribosomal protein L30/L7 family... 0.09 Orthogroups_2024-Update
MA_47548g0010 No alias (at2g01250 : 324.0) Ribosomal protein L30/L7 family... 0.15 Orthogroups_2024-Update
Mp3g13040.1 No alias component RPL7 of LSU proteome component 0.19 Orthogroups_2024-Update
PSME_00002449-RA No alias (at2g01250 : 310.0) Ribosomal protein L30/L7 family... 0.03 Orthogroups_2024-Update
PSME_00040767-RA No alias (at2g01250 : 333.0) Ribosomal protein L30/L7 family... 0.06 Orthogroups_2024-Update
PSME_00042409-RA No alias (at2g01250 : 328.0) Ribosomal protein L30/L7 family... 0.05 Orthogroups_2024-Update
Potri.001G047400 No alias Ribosomal protein L30/L7 family protein 0.04 Orthogroups_2024-Update
Potri.006G073200 No alias Ribosomal protein L30/L7 family protein 0.09 Orthogroups_2024-Update
Potri.008G008000 No alias Ribosomal protein L30/L7 family protein 0.09 Orthogroups_2024-Update
Potri.010G250900 No alias Ribosomal protein L30/L7 family protein 0.04 Orthogroups_2024-Update
Potri.018G140300 No alias Ribosomal protein L30/L7 family protein 0.1 Orthogroups_2024-Update
Pp1s11_173V6 No alias 60s ribosomal protein l7-1 0.04 Orthogroups_2024-Update
Pp1s243_40V6 No alias 60s ribosomal protein l7-2 0.12 Orthogroups_2024-Update
Pp1s7_369V6 No alias 60s ribosomal protein l7-2 0.13 Orthogroups_2024-Update
Sobic.007G085000.2 No alias component *(uL30) of large ribosomal-subunit (LSU) proteome 0.02 Orthogroups_2024-Update
Sobic.007G085001.1 No alias component *(uL30) of large ribosomal-subunit (LSU) proteome 0.18 Orthogroups_2024-Update
Sobic.007G184400.1 No alias component *(uL30) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
Solyc03g117060 No alias 60S ribosomal protein L7 (AHRD V3.3 *** B9GMC3_POPTR) 0.04 Orthogroups_2024-Update
Solyc06g068400 No alias 60S ribosomal protein L7 (AHRD V3.3 *** B9GMC3_POPTR) 0.08 Orthogroups_2024-Update
Solyc07g008370 No alias 60S ribosomal protein L7 (AHRD V3.3 *** A0A072VPV6_MEDTR) 0.21 Orthogroups_2024-Update
Solyc08g075090 No alias bHLH transcription factor144 0.15 Orthogroups_2024-Update
Sopen07g004260 No alias Ribosomal L30 N-terminal domain 0.23 Orthogroups_2024-Update
Sopen08g023720 No alias Ribosomal L30 N-terminal domain 0.18 Orthogroups_2024-Update
Sopen12g032080 No alias Ribosomal L30 N-terminal domain 0.2 Orthogroups_2024-Update
evm.model.contig_2085.3 No alias (at3g13580 : 237.0) Ribosomal protein L30/L7 family... 0.19 Orthogroups_2024-Update
evm.model.tig00020909.42 No alias (at2g44120 : 205.0) Ribosomal protein L30/L7 family... 0.11 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0003746 translation elongation factor activity IEP Predicted GO
MF GO:0003896 DNA primase activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006269 DNA replication, synthesis of RNA primer IEP Predicted GO
BP GO:0006325 chromatin organization IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
BP GO:0022607 cellular component assembly IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034622 cellular protein-containing complex assembly IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0043933 protein-containing complex subunit organization IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0065003 protein-containing complex assembly IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR012988 Ribosomal_L30_N 11 81
IPR016082 Ribosomal_L30_ferredoxin-like 87 137
No external refs found!