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  5. Seita.6G035600.1

Seita.6G035600.1


Description : regulatory protein *(NCL) of rRNA transcription


Gene families : OG_42_0002553 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002553_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.6G035600.1
Cluster HCAA Clusters: Cluster_45

Target Alias Description ECC score Gene Family Method Actions
234317 No alias nucleolin like 2 0.06 Orthogroups_2024-Update
At1g48920 No alias Nucleolin 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FVQ1] 0.05 Orthogroups_2024-Update
Bradi3g14907 No alias nucleolin like 2 0.09 Orthogroups_2024-Update
Brara.E01715.1 No alias regulatory protein *(NCL) of rRNA transcription 0.13 Orthogroups_2024-Update
Brara.F00386.1 No alias regulatory protein *(NCL) of rRNA transcription 0.06 Orthogroups_2024-Update
Brara.H00330.1 No alias regulatory protein *(NCL) of rRNA transcription 0.1 Orthogroups_2024-Update
Cre06.g275100 No alias nucleolin like 2 0.02 Orthogroups_2024-Update
GRMZM2G001850 No alias nucleolin like 2 0.08 Orthogroups_2024-Update
GRMZM2G131943 No alias nucleolin like 2 0.03 Orthogroups_2024-Update
Glyma.11G101500 No alias nucleolin like 2 0.05 Orthogroups_2024-Update
Glyma.12G027400 No alias nucleolin like 2 0.07 Orthogroups_2024-Update
HORVU2Hr1G103520.7 No alias regulatory protein *(NCL) of rRNA transcription 0.13 Orthogroups_2024-Update
Kfl00563_0110 kfl00563_0110_v1.... (at1g48920 : 147.0) Encodes ATNUC-L1 (NUCLEOLIN LIKE 1),... 0.06 Orthogroups_2024-Update
LOC_Os08g09350 No alias gar2, putative, expressed 0.05 Orthogroups_2024-Update
Mp1g21390.1 No alias rDNA chromatin transcription factor (NCL) 0.02 Orthogroups_2024-Update
Potri.005G093100 No alias nucleolin like 2 0.03 Orthogroups_2024-Update
Potri.007G071100 No alias nucleolin like 2 0.13 Orthogroups_2024-Update
Pp1s118_39V6 No alias 28 kda ribonucleoprotein 0.05 Orthogroups_2024-Update
Sobic.001G224200.1 No alias regulatory protein *(NCL) of rRNA transcription 0.16 Orthogroups_2024-Update
Sobic.007G069700.1 No alias regulatory protein *(NCL) of rRNA transcription 0.27 Orthogroups_2024-Update
Solyc02g014310 No alias glycine rich protein X55695 0.03 Orthogroups_2024-Update
evm.model.tig00001094.7 No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
CC GO:0005732 small nucleolar ribonucleoprotein complex IEP Predicted GO
CC GO:0005737 cytoplasm IEP Predicted GO
CC GO:0005741 mitochondrial outer membrane IEP Predicted GO
CC GO:0005759 mitochondrial matrix IEP Predicted GO
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006325 chromatin organization IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
MF GO:0008134 transcription factor binding IEP Predicted GO
MF GO:0008168 methyltransferase activity IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
BP GO:0022607 cellular component assembly IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0031968 organelle outer membrane IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
CC GO:0034457 Mpp10 complex IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034622 cellular protein-containing complex assembly IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
BP GO:0043933 protein-containing complex subunit organization IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044429 mitochondrial part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044452 nucleolar part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0065003 protein-containing complex assembly IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
CC GO:0098805 whole membrane IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR000504 RRM_dom 304 372
IPR000504 RRM_dom 412 477
No external refs found!