Seita.6G050300.1

Description : component *(uS3) of small ribosomal-subunit (SSU) proteome

Gene families : OG_42_0001926 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001926_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria italica: Seita.6G050300.1
Cluster	HCAA Clusters: Cluster_85

Target	Alias	Description	ECC score	Gene Family Method
A4A49_00336	No alias	40s ribosomal protein s3-3	0.06	Orthogroups_2024-Update
At2g31610	No alias	40S ribosomal protein S3-1...	0.05	Orthogroups_2024-Update
At5g35530	No alias	40S ribosomal protein S3-3...	0.04	Orthogroups_2024-Update
Bradi3g16150	No alias	Ribosomal protein S3 family protein	0.13	Orthogroups_2024-Update
Brara.C01612.1	No alias	component *(uS3) of small ribosomal-subunit (SSU) proteome	0.12	Orthogroups_2024-Update
Brara.C01619.1	No alias	component *(uS3) of small ribosomal-subunit (SSU) proteome	0.29	Orthogroups_2024-Update
Brara.D01897.1	No alias	component *(uS3) of small ribosomal-subunit (SSU) proteome	0.19	Orthogroups_2024-Update
Brara.D01899.1	No alias	component *(uS3) of small ribosomal-subunit (SSU) proteome	0.17	Orthogroups_2024-Update
Cre02.g102250	No alias	Ribosomal protein S3 family protein	0.04	Orthogroups_2024-Update
GRMZM2G074300	No alias	Ribosomal protein S3 family protein	0.06	Orthogroups_2024-Update
Glyma.09G156600	No alias	Ribosomal protein S3 family protein	0.05	Orthogroups_2024-Update
Glyma.10G133100	No alias	Ribosomal protein S3 family protein	0.11	Orthogroups_2024-Update
Glyma.10G133800	No alias	Ribosomal protein S3 family protein	0.07	Orthogroups_2024-Update
Glyma.16G207300	No alias	Ribosomal protein S3 family protein	0.11	Orthogroups_2024-Update
Glyma.16G207400	No alias	Ribosomal protein S3 family protein	0.07	Orthogroups_2024-Update
Glyma.20G083300	No alias	Ribosomal protein S3 family protein	0.12	Orthogroups_2024-Update
Kfl00057_0410	kfl00057_0410_v1.1	(at5g35530 : 390.0) Ribosomal protein S3 family protein;...	0.02	Orthogroups_2024-Update
MA_10436283g0010	No alias	(at5g35530 : 397.0) Ribosomal protein S3 family protein;...	0.05	Orthogroups_2024-Update
Mp1g16730.1	No alias	component RPS3 of SSU proteome	0.15	Orthogroups_2024-Update
PSME_00007401-RA	No alias	(at5g35530 : 366.0) Ribosomal protein S3 family protein;...	0.09	Orthogroups_2024-Update
PSME_00040312-RA	No alias	(at5g35530 : 390.0) Ribosomal protein S3 family protein;...	0.12	Orthogroups_2024-Update
Potri.006G222100	No alias	Ribosomal protein S3 family protein	0.1	Orthogroups_2024-Update
Potri.018G049100	No alias	Ribosomal protein S3 family protein	0.09	Orthogroups_2024-Update
Pp1s127_74V6	No alias	40s ribosomal protein	0.14	Orthogroups_2024-Update
Pp1s136_175V6	No alias	40s ribosomal protein	0.09	Orthogroups_2024-Update
Pp1s29_222V6	No alias	40s ribosomal protein	0.22	Orthogroups_2024-Update
Pp1s31_178V6	No alias	40s ribosomal protein	0.1	Orthogroups_2024-Update
Pp1s41_146V6	No alias	40s ribosomal protein	0.18	Orthogroups_2024-Update
Pp1s454_3V6	No alias	40s ribosomal protein	0.19	Orthogroups_2024-Update
Sobic.002G371100.1	No alias	component *(uS3) of small ribosomal-subunit (SSU) proteome	0.21	Orthogroups_2024-Update
Sobic.007G053300.1	No alias	component *(uS3) of small ribosomal-subunit (SSU) proteome	0.32	Orthogroups_2024-Update
Solyc07g041310	No alias	Ribosomal protein S3 family protein (AHRD V3.3 *** AT5G35530.1)	0.16	Orthogroups_2024-Update
Solyc08g061850	No alias	Ribosomal protein S3 family protein (AHRD V3.3 *** AT5G35530.1)	0.14	Orthogroups_2024-Update
Solyc08g061960	No alias	Ribosomal protein S3 family protein (AHRD V3.3 *** AT5G35530.1)	0.19	Orthogroups_2024-Update
Sopen07g020630	No alias	Ribosomal protein S3, C-terminal domain	0.31	Orthogroups_2024-Update
Sopen08g017410	No alias	Ribosomal protein S3, C-terminal domain	0.13	Orthogroups_2024-Update
Sopen08g017480	No alias	Ribosomal protein S3, C-terminal domain	0.2	Orthogroups_2024-Update
evm.model.contig_2149.7	No alias	(at5g35530 : 302.0) Ribosomal protein S3 family protein;...	0.32	Orthogroups_2024-Update
evm.model.tig00021462.41	No alias	(at2g31610 : 358.0) Ribosomal protein S3 family protein;...	0.16	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	16Dec
MF	GO:0003735	structural constituent of ribosome	IEA	16Dec
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006412	translation	IEA	16Dec
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001510	RNA methylation	IEP	Predicted GO
MF	GO:0001882	nucleoside binding	IEP	Predicted GO
MF	GO:0001883	purine nucleoside binding	IEP	Predicted GO
MF	GO:0003724	RNA helicase activity	IEP	Predicted GO
MF	GO:0003746	translation elongation factor activity	IEP	Predicted GO
MF	GO:0003924	GTPase activity	IEP	Predicted GO
MF	GO:0004809	tRNA (guanine-N2-)-methyltransferase activity	IEP	Predicted GO
MF	GO:0005525	GTP binding	IEP	Predicted GO
CC	GO:0005575	cellular_component	IEP	Predicted GO
CC	GO:0005634	nucleus	IEP	Predicted GO
CC	GO:0005840	ribosome	IEP	Predicted GO
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEP	Predicted GO
BP	GO:0006334	nucleosome assembly	IEP	Predicted GO
BP	GO:0006396	RNA processing	IEP	Predicted GO
BP	GO:0006399	tRNA metabolic process	IEP	Predicted GO
BP	GO:0006400	tRNA modification	IEP	Predicted GO
BP	GO:0006414	translational elongation	IEP	Predicted GO
BP	GO:0008033	tRNA processing	IEP	Predicted GO
MF	GO:0008135	translation factor activity, RNA binding	IEP	Predicted GO
MF	GO:0008175	tRNA methyltransferase activity	IEP	Predicted GO
MF	GO:0016423	tRNA (guanine) methyltransferase activity	IEP	Predicted GO
MF	GO:0016462	pyrophosphatase activity	IEP	Predicted GO
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	Predicted GO
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	Predicted GO
MF	GO:0017111	nucleoside-triphosphatase activity	IEP	Predicted GO
MF	GO:0019001	guanyl nucleotide binding	IEP	Predicted GO
MF	GO:0019843	rRNA binding	IEP	Predicted GO
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Predicted GO
BP	GO:0030488	tRNA methylation	IEP	Predicted GO
CC	GO:0031515	tRNA (m1A) methyltransferase complex	IEP	Predicted GO
MF	GO:0032549	ribonucleoside binding	IEP	Predicted GO
MF	GO:0032550	purine ribonucleoside binding	IEP	Predicted GO
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Predicted GO
CC	GO:0032991	protein-containing complex	IEP	Predicted GO
BP	GO:0034470	ncRNA processing	IEP	Predicted GO
BP	GO:0034660	ncRNA metabolic process	IEP	Predicted GO
CC	GO:0034708	methyltransferase complex	IEP	Predicted GO
BP	GO:0034728	nucleosome organization	IEP	Predicted GO
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Predicted GO
BP	GO:0042254	ribosome biogenesis	IEP	Predicted GO
CC	GO:0043226	organelle	IEP	Predicted GO
CC	GO:0043227	membrane-bounded organelle	IEP	Predicted GO
CC	GO:0043228	non-membrane-bounded organelle	IEP	Predicted GO
CC	GO:0043229	intracellular organelle	IEP	Predicted GO
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Predicted GO
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	Predicted GO
CC	GO:0043527	tRNA methyltransferase complex	IEP	Predicted GO
BP	GO:0044085	cellular component biogenesis	IEP	Predicted GO
CC	GO:0044424	intracellular part	IEP	Predicted GO
CC	GO:0044444	cytoplasmic part	IEP	Predicted GO
CC	GO:0044464	cell part	IEP	Predicted GO
CC	GO:1990904	ribonucleoprotein complex	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR004044	KH_dom_type_2	20	93
IPR001351	Ribosomal_S3_C	106	188

External Links

No external refs found!

Seita.6G050300.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation