1. Home
  2. Species
  3. Setaria italica
  4. Sequence
  5. Seita.6G053700.1

Seita.6G053700.1


Description : AHL clade-A transcription factor


Gene families : OG_42_0000350 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000350_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.6G053700.1
Cluster HCAA Clusters: Cluster_282

Target Alias Description ECC score Gene Family Method Actions
A4A49_14176 No alias at-hook motif nuclear-localized protein 26 0.03 Orthogroups_2024-Update
A4A49_18536 No alias at-hook motif nuclear-localized protein 23 0.02 Orthogroups_2024-Update
Bradi2g30423 No alias AT-hook motif nuclear-localized protein 20 0.03 Orthogroups_2024-Update
Solyc09g089620 No alias AT hook motif DNA-binding family protein (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP Predicted GO
MF GO:0005507 copper ion binding IEP Predicted GO
MF GO:0008649 rRNA methyltransferase activity IEP Predicted GO
MF GO:0016436 rRNA (uridine) methyltransferase activity IEP Predicted GO
MF GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water IEP Predicted GO
MF GO:0016840 carbon-nitrogen lyase activity IEP Predicted GO
MF GO:0016843 amine-lyase activity IEP Predicted GO
MF GO:0016844 strictosidine synthase activity IEP Predicted GO
CC GO:0031012 extracellular matrix IEP Predicted GO
BP GO:0031167 rRNA methylation IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
CC GO:0044421 extracellular region part IEP Predicted GO
MF GO:0045300 acyl-[acyl-carrier-protein] desaturase activity IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
MF GO:0070042 rRNA (uridine-N3-)-methyltransferase activity IEP Predicted GO
BP GO:0070475 rRNA base methylation IEP Predicted GO
InterPro domains Description Start Stop
IPR005175 PPC_dom 91 210
No external refs found!