Seita.6G060200.1

Description : subfamily ABCB transporter

Gene families : OG_42_0000040 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000040_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria italica: Seita.6G060200.1
Cluster	HCAA Clusters: Cluster_247

Target	Alias	Description	ECC score	Gene Family Method
233433	No alias	ABC transporter family protein	0.05	Orthogroups_2024-Update
Glyma.18G012700	No alias	P-glycoprotein 18	0.02	Orthogroups_2024-Update
MA_10436810g0020	No alias	(at3g28345 : 992.0) ABC transporter family protein;...	0.03	Orthogroups_2024-Update
MA_934204g0010	No alias	(at3g28345 : 1352.0) ABC transporter family protein;...	0.04	Orthogroups_2024-Update
Mp2g02910.1	No alias	auxin efflux transporter (ABCB19). subfamily ABCB transporter	0.02	Orthogroups_2024-Update
PSME_00033760-RA	No alias	(at2g47000 : 911.0) Multidrug resistance P-glycoprotein...	0.04	Orthogroups_2024-Update
Sobic.003G267700.1	No alias	subfamily ABCB transporter	0.04	Orthogroups_2024-Update
Sobic.004G174600.1	No alias	subfamily ABCB transporter	0.05	Orthogroups_2024-Update
Solyc02g071340	No alias	ABC transporter B family protein (AHRD V3.3 *** G7ILW7_MEDTR)	0.05	Orthogroups_2024-Update
Solyc06g072960	No alias	No description available	0.04	Orthogroups_2024-Update
Sopen02g032160	No alias	ABC transporter transmembrane region	0.06	Orthogroups_2024-Update
evm.model.tig00020952.7	No alias	(at4g25960 : 162.0) P-glycoprotein 2 (PGP2); FUNCTIONS...	0.01	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	16Dec
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
MF	GO:0008144	drug binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
CC	GO:0016020	membrane	IEA	16Dec
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	IEA	16Dec
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004518	nuclease activity	IEP	Predicted GO
MF	GO:0004519	endonuclease activity	IEP	Predicted GO
BP	GO:0006308	DNA catabolic process	IEP	Predicted GO
MF	GO:0008374	O-acyltransferase activity	IEP	Predicted GO
BP	GO:0009057	macromolecule catabolic process	IEP	Predicted GO
BP	GO:0019439	aromatic compound catabolic process	IEP	Predicted GO
BP	GO:0034655	nucleobase-containing compound catabolic process	IEP	Predicted GO
BP	GO:0044265	cellular macromolecule catabolic process	IEP	Predicted GO
BP	GO:0044270	cellular nitrogen compound catabolic process	IEP	Predicted GO
BP	GO:0046700	heterocycle catabolic process	IEP	Predicted GO
BP	GO:1901361	organic cyclic compound catabolic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR011527	ABC1_TM_dom	697	952
IPR011527	ABC1_TM_dom	61	332
IPR003439	ABC_transporter-like	399	548
IPR003439	ABC_transporter-like	1024	1173

External Links

No external refs found!