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  5. Seita.6G086200.1

Seita.6G086200.1


Description : alpha-class expansin


Gene families : OG_42_0000014 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000014_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.6G086200.1
Cluster HCAA Clusters: Cluster_92

Target Alias Description ECC score Gene Family Method Actions
Bradi2g10320 No alias expansin A14 0.04 Orthogroups_2024-Update
Brara.B01279.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
Brara.C02851.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
Mp3g09760.1 No alias alpha-class expansin 0.03 Orthogroups_2024-Update
Pp1s25_294V6 No alias expansin 2 0.02 Orthogroups_2024-Update
Sopen03g034870 No alias Pollen allergen 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006352 DNA-templated transcription, initiation IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR009009 RlpA-like_DPBB 72 157
IPR007117 Expansin_CBD 168 247
No external refs found!