Seita.6G112100.1

Description : component *(uL22) of large ribosomal-subunit (LSU) proteome

Gene families : OG_42_0001801 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001801_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria italica: Seita.6G112100.1
Cluster	HCAA Clusters: Cluster_75

Target	Alias	Description	ECC score	Gene Family Method
96251	No alias	Ribosomal protein L22p/L17e family protein	0.05	Orthogroups_2024-Update
At1g27400	No alias	60S ribosomal protein L17-1...	0.03	Orthogroups_2024-Update
At1g67430	No alias	60S ribosomal protein L17-2...	0.04	Orthogroups_2024-Update
Bradi3g41150	No alias	Ribosomal protein L22p/L17e family protein	0.06	Orthogroups_2024-Update
Bradi4g08667	No alias	Ribosomal protein L22p/L17e family protein	0.07	Orthogroups_2024-Update
Brara.B01721.1	No alias	component *(uL22) of large ribosomal-subunit (LSU) proteome	0.08	Orthogroups_2024-Update
Brara.G02572.1	No alias	component *(uL22) of large ribosomal-subunit (LSU) proteome	0.06	Orthogroups_2024-Update
Brara.I03016.1	No alias	component *(uL22) of large ribosomal-subunit (LSU) proteome	0.03	Orthogroups_2024-Update
Cre13.g568900	No alias	Ribosomal protein L22p/L17e family protein	0.05	Orthogroups_2024-Update
GRMZM2G148744	No alias	Ribosomal protein L22p/L17e family protein	0.08	Orthogroups_2024-Update
Glyma.05G146800	No alias	Ribosomal protein L22p/L17e family protein	0.1	Orthogroups_2024-Update
Glyma.08G103700	No alias	Ribosomal protein L22p/L17e family protein	0.06	Orthogroups_2024-Update
Glyma.11G249700	No alias	Ribosomal protein L22p/L17e family protein	0.09	Orthogroups_2024-Update
Glyma.18G007500	No alias	Ribosomal protein L22p/L17e family protein	0.03	Orthogroups_2024-Update
HORVU5Hr1G052280.1	No alias	component *(uL22) of large ribosomal-subunit (LSU) proteome	0.09	Orthogroups_2024-Update
HORVU7Hr1G054010.1	No alias	component *(uL22) of large ribosomal-subunit (LSU) proteome	0.04	Orthogroups_2024-Update
Kfl00006_0040	kfl00006_0040_v1.1	(at1g67430 : 219.0) Ribosomal protein L22p/L17e family...	0.04	Orthogroups_2024-Update
MA_10430182g0010	No alias	(at1g27400 : 272.0) Ribosomal protein L22p/L17e family...	0.03	Orthogroups_2024-Update
Mp1g10230.1	No alias	component RPL17 of LSU proteome component	0.02	Orthogroups_2024-Update
PSME_00016621-RA	No alias	(o48557\|rl17_maize : 300.0) 60S ribosomal protein L17 -...	0.04	Orthogroups_2024-Update
Potri.012G096600	No alias	Ribosomal protein L22p/L17e family protein	0.07	Orthogroups_2024-Update
Pp1s22_76V6	No alias	60s ribosomal protein	0.03	Orthogroups_2024-Update
Pp1s364_56V6	No alias	60s ribosomal protein	0.06	Orthogroups_2024-Update
Pp1s38_376V6	No alias	60s ribosomal protein	0.05	Orthogroups_2024-Update
Pp1s97_74V6	No alias	60s ribosomal protein	0.05	Orthogroups_2024-Update
Pp1s97_78V6	No alias	60s ribosomal protein	0.07	Orthogroups_2024-Update
Sobic.001G016400.1	No alias	component *(uL22) of large ribosomal-subunit (LSU) proteome	0.07	Orthogroups_2024-Update
Sobic.001G016500.1	No alias	component *(uL22) of large ribosomal-subunit (LSU) proteome	0.09	Orthogroups_2024-Update
Sobic.009G076400.1	No alias	component *(uL22) of large ribosomal-subunit (LSU) proteome	0.07	Orthogroups_2024-Update
Solyc03g111230	No alias	Ribosomal protein (AHRD V3.3 *** Q947H2_PETHY)	0.09	Orthogroups_2024-Update
Solyc06g071870	No alias	Ribosomal protein (AHRD V3.3 *** Q947H2_PETHY)	0.07	Orthogroups_2024-Update
Solyc06g071880	No alias	60S ribosomal protein L17 (AHRD V3.3 *** A0A0D3QSL6_TOBAC)	0.07	Orthogroups_2024-Update
Sopen03g030370	No alias	Ribosomal protein L22p/L17e	0.07	Orthogroups_2024-Update
Sopen06g028150	No alias	Ribosomal protein L22p/L17e	0.06	Orthogroups_2024-Update
Sopen06g028160	No alias	Ribosomal protein L22p/L17e	0.08	Orthogroups_2024-Update
evm.model.contig_2031.15	No alias	(p35267\|rl172_horvu : 178.0) 60S ribosomal protein L17-2...	0.08	Orthogroups_2024-Update
evm.model.tig00001215.8	No alias	(o48557\|rl17_maize : 230.0) 60S ribosomal protein L17 -...	0.05	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	16Dec
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	16Dec
BP	GO:0006412	translation	IEA	16Dec
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000049	tRNA binding	IEP	Predicted GO
MF	GO:0000166	nucleotide binding	IEP	Predicted GO
MF	GO:0003676	nucleic acid binding	IEP	Predicted GO
MF	GO:0003697	single-stranded DNA binding	IEP	Predicted GO
MF	GO:0003723	RNA binding	IEP	Predicted GO
MF	GO:0004176	ATP-dependent peptidase activity	IEP	Predicted GO
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	Predicted GO
MF	GO:0004819	glutamine-tRNA ligase activity	IEP	Predicted GO
MF	GO:0005488	binding	IEP	Predicted GO
MF	GO:0005524	ATP binding	IEP	Predicted GO
CC	GO:0005741	mitochondrial outer membrane	IEP	Predicted GO
BP	GO:0006082	organic acid metabolic process	IEP	Predicted GO
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Predicted GO
BP	GO:0006351	transcription, DNA-templated	IEP	Predicted GO
BP	GO:0006399	tRNA metabolic process	IEP	Predicted GO
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	Predicted GO
BP	GO:0006425	glutaminyl-tRNA aminoacylation	IEP	Predicted GO
BP	GO:0006520	cellular amino acid metabolic process	IEP	Predicted GO
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Predicted GO
MF	GO:0008097	5S rRNA binding	IEP	Predicted GO
MF	GO:0008144	drug binding	IEP	Predicted GO
BP	GO:0016070	RNA metabolic process	IEP	Predicted GO
MF	GO:0016874	ligase activity	IEP	Predicted GO
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	Predicted GO
MF	GO:0017076	purine nucleotide binding	IEP	Predicted GO
BP	GO:0019752	carboxylic acid metabolic process	IEP	Predicted GO
MF	GO:0019843	rRNA binding	IEP	Predicted GO
CC	GO:0019867	outer membrane	IEP	Predicted GO
MF	GO:0030554	adenyl nucleotide binding	IEP	Predicted GO
CC	GO:0031968	organelle outer membrane	IEP	Predicted GO
MF	GO:0032553	ribonucleotide binding	IEP	Predicted GO
MF	GO:0032555	purine ribonucleotide binding	IEP	Predicted GO
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Predicted GO
BP	GO:0032774	RNA biosynthetic process	IEP	Predicted GO
BP	GO:0034660	ncRNA metabolic process	IEP	Predicted GO
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Predicted GO
MF	GO:0036094	small molecule binding	IEP	Predicted GO
BP	GO:0043038	amino acid activation	IEP	Predicted GO
BP	GO:0043039	tRNA aminoacylation	IEP	Predicted GO
MF	GO:0043168	anion binding	IEP	Predicted GO
BP	GO:0043436	oxoacid metabolic process	IEP	Predicted GO
BP	GO:0044281	small molecule metabolic process	IEP	Predicted GO
BP	GO:0046483	heterocycle metabolic process	IEP	Predicted GO
BP	GO:0090304	nucleic acid metabolic process	IEP	Predicted GO
MF	GO:0097159	organic cyclic compound binding	IEP	Predicted GO
MF	GO:0097367	carbohydrate derivative binding	IEP	Predicted GO
BP	GO:0097659	nucleic acid-templated transcription	IEP	Predicted GO
CC	GO:0098805	whole membrane	IEP	Predicted GO
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Predicted GO
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	Predicted GO
MF	GO:1901265	nucleoside phosphate binding	IEP	Predicted GO
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Predicted GO
MF	GO:1901363	heterocyclic compound binding	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001063	Ribosomal_L22	17	152

External Links

No external refs found!

Seita.6G112100.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation