1. Home
  2. Species
  3. Setaria italica
  4. Sequence
  5. Seita.6G121500.1

Seita.6G121500.1


Description : GARP subgroup PHL transcription factor


Gene families : OG_42_0000021 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000021_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.6G121500.1
Cluster HCAA Clusters: Cluster_90

Target Alias Description ECC score Gene Family Method Actions
149357 No alias Homeodomain-like superfamily protein 0.02 Orthogroups_2024-Update
A4A49_37728 No alias protein phosphate starvation response 1 0.03 Orthogroups_2024-Update
At2g40260 No alias Homeodomain-like superfamily protein... 0.03 Orthogroups_2024-Update
Bradi1g28920 No alias phosphate starvation response 1 0.04 Orthogroups_2024-Update
Bradi3g36710 No alias Homeodomain-like superfamily protein 0.01 Orthogroups_2024-Update
Bradi3g52500 No alias Homeodomain-like superfamily protein 0.02 Orthogroups_2024-Update
Brara.A03315.1 No alias GARP subgroup PHL transcription factor 0.03 Orthogroups_2024-Update
Brara.C03930.1 No alias transcription factor *(PHR1) & GARP subgroup PHL... 0.03 Orthogroups_2024-Update
Brara.D02442.1 No alias transcription factor *(CLAUSA) 0.04 Orthogroups_2024-Update
Brara.E01728.1 No alias KANADI-type transcription factor 0.02 Orthogroups_2024-Update
GRMZM2G162409 No alias phosphate starvation response 1 0.03 Orthogroups_2024-Update
GRMZM2G173943 No alias myb-like HTH transcriptional regulator family protein 0.03 Orthogroups_2024-Update
Glyma.15G123000 No alias Homeodomain-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.20G035300 No alias Homeodomain-like superfamily protein 0.02 Orthogroups_2024-Update
HORVU5Hr1G054450.1 No alias GARP subgroup PHL transcription factor 0.05 Orthogroups_2024-Update
LOC_Os02g07770 No alias Myb transcription factor, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os12g01490 No alias MYB family transcription factor, putative, expressed 0.02 Orthogroups_2024-Update
MA_10433112g0010 No alias (at2g01060 : 160.0) myb-like HTH transcriptional... 0.03 Orthogroups_2024-Update
Mp3g04970.1 No alias G2-like GARP transcription factor 0.02 Orthogroups_2024-Update
Potri.003G096300 No alias Homeodomain-like superfamily protein 0.02 Orthogroups_2024-Update
Sopen08g024980 No alias Myb-like DNA-binding domain 0.03 Orthogroups_2024-Update
Sopen11g006610 No alias Myb-like DNA-binding domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000062 fatty-acyl-CoA binding IEP Predicted GO
MF GO:0000155 phosphorelay sensor kinase activity IEP Predicted GO
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Predicted GO
CC GO:0000786 nucleosome IEP Predicted GO
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Predicted GO
MF GO:0003729 mRNA binding IEP Predicted GO
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
MF GO:0003917 DNA topoisomerase type I activity IEP Predicted GO
MF GO:0004673 protein histidine kinase activity IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0006401 RNA catabolic process IEP Predicted GO
BP GO:0006402 mRNA catabolic process IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Predicted GO
MF GO:0032182 ubiquitin-like protein binding IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
MF GO:0033218 amide binding IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
CC GO:0035145 exon-exon junction complex IEP Predicted GO
MF GO:0043130 ubiquitin binding IEP Predicted GO
MF GO:0043531 ADP binding IEP Predicted GO
CC GO:0044815 DNA packaging complex IEP Predicted GO
MF GO:1901567 fatty acid derivative binding IEP Predicted GO
MF GO:1901681 sulfur compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR001005 SANT/Myb 46 96
IPR025756 Myb_CC_LHEQLE 129 175
No external refs found!