1. Home
  2. Species
  3. Setaria italica
  4. Sequence
  5. Seita.6G125400.1

Seita.6G125400.1


Description : histone *(H4)


Gene families : OG_42_0000156 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000156_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.6G125400.1
Cluster HCAA Clusters: Cluster_213

Target Alias Description ECC score Gene Family Method Actions
167497 No alias Histone superfamily protein 0.05 Orthogroups_2024-Update
A4A49_58366 No alias histone h4 0.03 Orthogroups_2024-Update
A4A49_59902 No alias histone h4 0.03 Orthogroups_2024-Update
A4A49_60016 No alias histone h4 0.03 Orthogroups_2024-Update
AC196961.2_FG003 No alias Histone superfamily protein 0.05 Orthogroups_2024-Update
AC212565.3_FG001 No alias Histone superfamily protein 0.05 Orthogroups_2024-Update
AC233865.1_FG001 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
At2g28740 No alias Histone H4 [Source:UniProtKB/TrEMBL;Acc:A0A178VF54] 0.06 Orthogroups_2024-Update
At3g53730 No alias Histone H4 [Source:UniProtKB/TrEMBL;Acc:A0A178VF54] 0.03 Orthogroups_2024-Update
Bradi2g22787 No alias Function unknown 0.02 Orthogroups_2024-Update
Brara.C01220.1 No alias histone *(H4) 0.02 Orthogroups_2024-Update
Brara.C01885.1 No alias histone *(H4) 0.03 Orthogroups_2024-Update
Brara.D02284.1 No alias histone *(H4) 0.03 Orthogroups_2024-Update
Brara.F00466.1 No alias histone *(H4) 0.03 Orthogroups_2024-Update
Brara.G01399.1 No alias histone *(H4) 0.04 Orthogroups_2024-Update
Brara.H02899.1 No alias histone *(H4) 0.03 Orthogroups_2024-Update
Brara.I03658.1 No alias histone *(H4) 0.04 Orthogroups_2024-Update
Cre06.g264600 No alias histone H4 0.05 Orthogroups_2024-Update
Cre06.g265050 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Cre06.g265200 No alias histone H4 0.05 Orthogroups_2024-Update
Cre06.g265450 No alias histone H4 0.03 Orthogroups_2024-Update
Cre06.g268000 No alias histone H4 0.06 Orthogroups_2024-Update
Cre06.g268400 No alias Histone superfamily protein 0.1 Orthogroups_2024-Update
Cre06.g271300 No alias histone H4 0.08 Orthogroups_2024-Update
Cre06.g274150 No alias histone H4 0.03 Orthogroups_2024-Update
Cre06.g274300 No alias histone H4 0.13 Orthogroups_2024-Update
Cre06.g274900 No alias histone H4 0.06 Orthogroups_2024-Update
Cre06.g275700 No alias histone H4 0.11 Orthogroups_2024-Update
Cre06.g276650 No alias histone H4 0.09 Orthogroups_2024-Update
Cre12.g504600 No alias histone H4 0.06 Orthogroups_2024-Update
Cre12.g504850 No alias histone H4 0.06 Orthogroups_2024-Update
Cre12.g505450 No alias Histone superfamily protein 0.05 Orthogroups_2024-Update
Cre12.g506350 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Cre12.g506450 No alias Histone superfamily protein 0.06 Orthogroups_2024-Update
Cre17.g708650 No alias Histone superfamily protein 0.02 Orthogroups_2024-Update
Cre17.g709100 No alias Histone superfamily protein 0.12 Orthogroups_2024-Update
GRMZM2G084195 No alias Histone superfamily protein 0.05 Orthogroups_2024-Update
GRMZM2G143780 No alias Histone superfamily protein 0.05 Orthogroups_2024-Update
GRMZM2G149178 No alias Histone superfamily protein 0.05 Orthogroups_2024-Update
Glyma.02G224100 No alias Histone superfamily protein 0.06 Orthogroups_2024-Update
Glyma.03G171400 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Glyma.11G146481 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
Glyma.11G177800 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
Glyma.11G177900 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
Glyma.11G178200 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Glyma.12G074500 No alias Histone superfamily protein 0.05 Orthogroups_2024-Update
Glyma.13G147000 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
Glyma.14G190800 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Glyma.15G043200 No alias Histone superfamily protein 0.03 Orthogroups_2024-Update
Glyma.17G063200 No alias histone H4 0.04 Orthogroups_2024-Update
Glyma.18G064300 No alias Histone superfamily protein 0.05 Orthogroups_2024-Update
Glyma.18G064401 No alias Histone superfamily protein 0.04 Orthogroups_2024-Update
Glyma.20G083800 No alias histone H4 0.04 Orthogroups_2024-Update
HORVU1Hr1G073680.1 No alias histone *(H4) 0.05 Orthogroups_2024-Update
HORVU2Hr1G093680.3 No alias histone *(H4) 0.03 Orthogroups_2024-Update
HORVU2Hr1G098340.4 No alias histone *(H4) 0.04 Orthogroups_2024-Update
HORVU4Hr1G063260.2 No alias histone *(H4) 0.06 Orthogroups_2024-Update
HORVU5Hr1G087830.1 No alias histone *(H4) 0.03 Orthogroups_2024-Update
Kfl00106_g14 kfl00106_g14_v1.1 (at5g59970 : 160.0) Histone superfamily protein;... 0.02 Orthogroups_2024-Update
Kfl00240_g19 kfl00240_g19_v1.1 (at5g59970 : 160.0) Histone superfamily protein;... 0.03 Orthogroups_2024-Update
Kfl00394_0030 kfl00394_0030_v1.1 (at5g59970 : 160.0) Histone superfamily protein;... 0.03 Orthogroups_2024-Update
MA_10426093g0010 No alias (at5g59970 : 122.0) Histone superfamily protein;... 0.02 Orthogroups_2024-Update
MA_97951g0010 No alias (at5g59970 : 160.0) Histone superfamily protein;... 0.07 Orthogroups_2024-Update
Mp4g03080.1 No alias histone (H4) 0.03 Orthogroups_2024-Update
Mp5g22450.1 No alias histone (H4) 0.02 Orthogroups_2024-Update
Mp5g22460.1 No alias histone (H4) 0.02 Orthogroups_2024-Update
Mp5g22470.1 No alias histone (H4) 0.03 Orthogroups_2024-Update
PSME_00034343-RA No alias (at5g59970 : 162.0) Histone superfamily protein;... 0.05 Orthogroups_2024-Update
Pp1s378_30V6 No alias histone h4 0.03 Orthogroups_2024-Update
Seita.2G301400.1 No alias histone *(H4) 0.05 Orthogroups_2024-Update
Sobic.006G191800.1 No alias histone *(H4) 0.06 Orthogroups_2024-Update
Sobic.009G167500.1 No alias histone *(H4) 0.03 Orthogroups_2024-Update
Solyc04g011390 No alias histone H4 (AHRD V3.3 *** AT2G28740.1) 0.04 Orthogroups_2024-Update
Solyc05g054610 No alias histone H4 (AHRD V3.3 *** AT2G28740.1) 0.02 Orthogroups_2024-Update
Solyc06g005420 No alias histone H4 (AHRD V3.3 *** AT2G28740.1) 0.02 Orthogroups_2024-Update
Solyc06g005430 No alias histone H4 (AHRD V3.3 *** AT2G28740.1) 0.04 Orthogroups_2024-Update
Solyc06g072240 No alias histone H4 (AHRD V3.3 *** AT2G28740.1) 0.02 Orthogroups_2024-Update
Solyc06g075830 No alias histone H4 (AHRD V3.3 *** AT2G28740.1) 0.04 Orthogroups_2024-Update
Solyc06g075850 No alias No description available 0.04 Orthogroups_2024-Update
Solyc06g075930 No alias histone H4 (AHRD V3.3 *** AT2G28740.1) 0.04 Orthogroups_2024-Update
Solyc06g075960 No alias histone H4 (AHRD V3.3 *** AT2G28740.1) 0.04 Orthogroups_2024-Update
Solyc11g066160 No alias histone H4 (AHRD V3.3 *** AT2G28740.1) 0.04 Orthogroups_2024-Update
Solyc11g072840 No alias histone H4 (AHRD V3.3 *** AT2G28740.1) 0.04 Orthogroups_2024-Update
Solyc11g072860 No alias histone H4 (AHRD V3.3 *** AT2G28740.1) 0.04 Orthogroups_2024-Update
Sopen04g005580 No alias Core histone H2A/H2B/H3/H4 0.05 Orthogroups_2024-Update
Sopen05g033090 No alias Core histone H2A/H2B/H3/H4 0.02 Orthogroups_2024-Update
Sopen06g001390 No alias Core histone H2A/H2B/H3/H4 0.03 Orthogroups_2024-Update
Sopen06g001400 No alias Core histone H2A/H2B/H3/H4 0.05 Orthogroups_2024-Update
Sopen06g028560 No alias Core histone H2A/H2B/H3/H4 0.04 Orthogroups_2024-Update
Sopen06g032260 No alias Core histone H2A/H2B/H3/H4 0.08 Orthogroups_2024-Update
Sopen06g032280 No alias Core histone H2A/H2B/H3/H4 0.06 Orthogroups_2024-Update
Sopen06g032360 No alias Core histone H2A/H2B/H3/H4 0.06 Orthogroups_2024-Update
Sopen06g032380 No alias Core histone H2A/H2B/H3/H4 0.03 Orthogroups_2024-Update
Sopen11g030510 No alias Core histone H2A/H2B/H3/H4 0.05 Orthogroups_2024-Update
Sopen11g030530 No alias Core histone H2A/H2B/H3/H4 0.07 Orthogroups_2024-Update
evm.model.contig_2255.1 No alias (at5g59970 : 154.0) Histone superfamily protein;... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000808 origin recognition complex IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0004568 chitinase activity IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
BP GO:0006022 aminoglycan metabolic process IEP Predicted GO
BP GO:0006026 aminoglycan catabolic process IEP Predicted GO
BP GO:0006030 chitin metabolic process IEP Predicted GO
BP GO:0006032 chitin catabolic process IEP Predicted GO
BP GO:0006040 amino sugar metabolic process IEP Predicted GO
BP GO:0006260 DNA replication IEP Predicted GO
BP GO:0006813 potassium ion transport IEP Predicted GO
MF GO:0015079 potassium ion transmembrane transporter activity IEP Predicted GO
BP GO:0016998 cell wall macromolecule catabolic process IEP Predicted GO
BP GO:0030001 metal ion transport IEP Predicted GO
BP GO:0042737 drug catabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
BP GO:0044036 cell wall macromolecule metabolic process IEP Predicted GO
CC GO:0044427 chromosomal part IEP Predicted GO
BP GO:0046348 amino sugar catabolic process IEP Predicted GO
MF GO:0046873 metal ion transmembrane transporter activity IEP Predicted GO
BP GO:0071805 potassium ion transmembrane transport IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
BP GO:1901071 glucosamine-containing compound metabolic process IEP Predicted GO
BP GO:1901072 glucosamine-containing compound catabolic process IEP Predicted GO
BP GO:1901136 carbohydrate derivative catabolic process IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
BP GO:1901565 organonitrogen compound catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR035425 CENP-T/H4_C 39 96
No external refs found!