Seita.6G156800.1


Description : MADS/AGL-type transcription factor


Gene families : OG_42_0000009 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.6G156800.1
Cluster HCAA Clusters: Cluster_46

Target Alias Description ECC score Gene Family Method Actions
A4A49_19521 No alias developmental protein sepallata 1 0.03 Orthogroups_2024-Update
A4A49_27621 No alias agamous-like mads-box protein agl9 0.03 Orthogroups_2024-Update
At1g77950 No alias AGAMOUS-like 67 [Source:UniProtKB/TrEMBL;Acc:F4I8L6] 0.03 Orthogroups_2024-Update
At2g24840 No alias Agamous-like MADS-box protein AGL61... 0.02 Orthogroups_2024-Update
Bradi2g57000 No alias K-box region and MADS-box transcription factor family protein 0.01 Orthogroups_2024-Update
Bradi4g34680 No alias K-box region and MADS-box transcription factor family protein 0.03 Orthogroups_2024-Update
Brara.C00582.1 No alias MADS/AGL-type transcription factor 0.03 Orthogroups_2024-Update
Brara.J00748.1 No alias MADS/AGL-type transcription factor 0.02 Orthogroups_2024-Update
GRMZM2G003514 No alias AGAMOUS-like 6 0.02 Orthogroups_2024-Update
GRMZM2G099577 No alias AGAMOUS-like 62 0.02 Orthogroups_2024-Update
Glyma.05G050700 No alias AGAMOUS-like 19 0.03 Orthogroups_2024-Update
Glyma.05G163200 No alias K-box region and MADS-box transcription factor family protein 0.01 Orthogroups_2024-Update
Glyma.09G283800 No alias K-box region and MADS-box transcription factor family protein 0.03 Orthogroups_2024-Update
Glyma.20G136700 No alias AGAMOUS-like 62 0.03 Orthogroups_2024-Update
HORVU1Hr1G064150.2 No alias MADS/AGL-type transcription factor 0.02 Orthogroups_2024-Update
LOC_Os02g06860 No alias OsMADS80 - MADS-box family gene with M-alpha type-box, expressed 0.02 Orthogroups_2024-Update
LOC_Os10g39130 No alias OsMADS56 - MADS-box family gene with MIKCc type-box, expressed 0.03 Orthogroups_2024-Update
LOC_Os12g21880 No alias OsMADS74 - MADS-box family gene with M-alpha type-box, expressed 0.02 Orthogroups_2024-Update
Potri.002G079000 No alias K-box region and MADS-box transcription factor family protein 0.03 Orthogroups_2024-Update
Potri.004G130900 No alias AGAMOUS-like 62 0.04 Orthogroups_2024-Update
Potri.015G134800 No alias K-box region and MADS-box transcription factor family protein 0.02 Orthogroups_2024-Update
Pp1s209_130V6 No alias mads-box transcription factor 0.01 Orthogroups_2024-Update
Seita.1G273400.1 No alias regulatory protein *(SEPALLATA) of floral meristem... 0.03 Orthogroups_2024-Update
Seita.4G160200.1 No alias MADS/AGL-type transcription factor 0.04 Orthogroups_2024-Update
Seita.6G194800.1 No alias MADS/AGL-type transcription factor 0.02 Orthogroups_2024-Update
Seita.6G223600.1 No alias MADS/AGL-type transcription factor 0.01 Orthogroups_2024-Update
Sopen03g033910 No alias K-box region 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA 16Dec
MF GO:0003700 DNA-binding transcription factor activity IEA 16Dec
CC GO:0005634 nucleus IEA 16Dec
BP GO:0006355 regulation of transcription, DNA-templated IEA 16Dec
MF GO:0046983 protein dimerization activity IEA 16Dec
Type GO Term Name Evidence Source
MF GO:0005507 copper ion binding IEP Predicted GO
BP GO:0006465 signal peptide processing IEP Predicted GO
BP GO:0010206 photosystem II repair IEP Predicted GO
BP GO:0010207 photosystem II assembly IEP Predicted GO
BP GO:0030091 protein repair IEP Predicted GO
InterPro domains Description Start Stop
IPR002487 TF_Kbox 83 170
IPR002100 TF_MADSbox 10 57
No external refs found!