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  5. Seita.6G162800.1

Seita.6G162800.1


Description : component *(SDF2) of ERdj3B-BiP-SDF2 chaperone complex


Gene families : OG_42_0004556 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004556_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.6G162800.1
Cluster HCAA Clusters: Cluster_41

Target Alias Description ECC score Gene Family Method Actions
At2g25110 No alias Stromal cell-derived factor 2-like protein... 0.07 Orthogroups_2024-Update
Bradi3g19740 No alias stromal cell-derived factor 2-like protein precursor 0.14 Orthogroups_2024-Update
Bradi3g36940 No alias stromal cell-derived factor 2-like protein precursor 0.18 Orthogroups_2024-Update
Brara.D01527.1 No alias component *(SDF2) of ERdj3B-BiP-SDF2 chaperone complex 0.03 Orthogroups_2024-Update
Glyma.04G061900 No alias stromal cell-derived factor 2-like protein precursor 0.05 Orthogroups_2024-Update
HORVU7Hr1G079030.1 No alias component *(SDF2) of ERdj3B-BiP-SDF2 chaperone complex 0.03 Orthogroups_2024-Update
LOC_Os08g17680 No alias stromal cell-derived factor 2-like protein precursor,... 0.02 Orthogroups_2024-Update
PSME_00027052-RA No alias (at2g25110 : 306.0) Encodes an endoplasmic reticulum... 0.07 Orthogroups_2024-Update
Potri.018G020700 No alias stromal cell-derived factor 2-like protein precursor 0.07 Orthogroups_2024-Update
Pp1s108_86V6 No alias Stromal cell-derived factor 2-like protein precursor... 0.03 Orthogroups_2024-Update
Pp1s213_64V6 No alias F13D4.70; MIR domain-containing protein [Arabidopsis thaliana] 0.05 Orthogroups_2024-Update
Sobic.007G117500.1 No alias component *(SDF2) of ERdj3B-BiP-SDF2 chaperone complex 0.09 Orthogroups_2024-Update
Sobic.007G140600.1 No alias component *(SDF2) of ERdj3B-BiP-SDF2 chaperone complex 0.04 Orthogroups_2024-Update
Solyc03g117020 No alias Stromal cell-derived factor 2-like protein (AHRD V3.3... 0.07 Orthogroups_2024-Update
Sopen03g035920 No alias MIR domain 0.04 Orthogroups_2024-Update
evm.model.contig_2090.11 No alias (at2g25110 : 106.0) Encodes an endoplasmic reticulum... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
MF GO:0004843 thiol-dependent ubiquitin-specific protease activity IEP Predicted GO
MF GO:0005048 signal sequence binding IEP Predicted GO
MF GO:0005509 calcium ion binding IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005783 endoplasmic reticulum IEP Predicted GO
CC GO:0005839 proteasome core complex IEP Predicted GO
BP GO:0006457 protein folding IEP Predicted GO
BP GO:0006621 protein retention in ER lumen IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
MF GO:0016887 ATPase activity IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
BP GO:0032507 maintenance of protein location in cell IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
MF GO:0033218 amide binding IEP Predicted GO
BP GO:0035437 maintenance of protein localization in endoplasmic reticulum IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Predicted GO
MF GO:0042277 peptide binding IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0045185 maintenance of protein location IEP Predicted GO
MF GO:0046923 ER retention sequence binding IEP Predicted GO
MF GO:0051082 unfolded protein binding IEP Predicted GO
BP GO:0051235 maintenance of location IEP Predicted GO
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Predicted GO
BP GO:0051651 maintenance of location in cell IEP Predicted GO
BP GO:0072595 maintenance of protein localization in organelle IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:0101005 ubiquitinyl hydrolase activity IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
InterPro domains Description Start Stop
IPR016093 MIR_motif 67 199
No external refs found!