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  5. Seita.6G166300.1

Seita.6G166300.1


Description : RING-H2-class ATL-subclass E3 ubiquitin ligase


Gene families : OG_42_0000883 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000883_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.6G166300.1
Cluster HCAA Clusters: Cluster_119

Target Alias Description ECC score Gene Family Method Actions
Bradi4g29340 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.13G071600 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.17G068300 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.17G091600 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
LOC_Os02g50930 No alias RING-H2 finger protein, putative, expressed 0.02 Orthogroups_2024-Update
Pp1s137_264V6 No alias ring finger 0.02 Orthogroups_2024-Update
Solyc07g006360 No alias RING/U-box superfamily protein (AHRD V3.3 *** AT4G30400.1) 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0005875 microtubule associated complex IEP Predicted GO
BP GO:0007017 microtubule-based process IEP Predicted GO
CC GO:0030286 dynein complex IEP Predicted GO
CC GO:0044430 cytoskeletal part IEP Predicted GO
CC GO:1902494 catalytic complex IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 151 194
No external refs found!