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  5. Seita.6G185900.1

Seita.6G185900.1


Description : zf-HD-type transcription factor


Gene families : OG_42_0000122 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000122_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.6G185900.1
Cluster HCAA Clusters: Cluster_294

Target Alias Description ECC score Gene Family Method Actions
A4A49_19702 No alias mini zinc finger protein 3 0.04 Orthogroups_2024-Update
At2g18350 No alias Zinc-finger homeodomain protein 6... 0.03 Orthogroups_2024-Update
Bradi4g30230 No alias mini zinc finger 2 0.02 Orthogroups_2024-Update
Glyma.01G025000 No alias homeobox protein 22 0.03 Orthogroups_2024-Update
Glyma.02G180800 No alias homeobox protein 22 0.03 Orthogroups_2024-Update
Glyma.09G170500 No alias homeobox protein 31 0.03 Orthogroups_2024-Update
Glyma.20G075300 No alias homeobox protein 22 0.03 Orthogroups_2024-Update
HORVU1Hr1G091470.1 No alias zf-HD-type transcription factor 0.03 Orthogroups_2024-Update
HORVU2Hr1G075950.1 No alias zf-HD-type transcription factor 0.03 Orthogroups_2024-Update
HORVU5Hr1G069730.1 No alias zf-HD-type transcription factor 0.03 Orthogroups_2024-Update
LOC_Os11g03420 No alias ZF-HD protein dimerisation region containing protein, expressed 0.04 Orthogroups_2024-Update
LOC_Os11g13930 No alias ZF-HD protein dimerisation region containing protein, expressed 0.02 Orthogroups_2024-Update
PSME_00002749-RA No alias (at2g02540 : 197.0) Zinc finger homeobox protein.... 0.02 Orthogroups_2024-Update
PSME_00036966-RA No alias (at3g28917 : 105.0) mini zinc finger 2 (MIF2); CONTAINS... 0.02 Orthogroups_2024-Update
Potri.003G000400 No alias homeobox protein 31 0.03 Orthogroups_2024-Update
Potri.015G032700 No alias homeobox protein 34 0.03 Orthogroups_2024-Update
Pp1s12_3V6 No alias No description available 0.02 Orthogroups_2024-Update
Seita.2G236300.1 No alias zf-HD-type transcription factor 0.02 Orthogroups_2024-Update
Sopen04g034080 No alias ZF-HD protein dimerisation region 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000347 THO complex IEP Predicted GO
CC GO:0000445 THO complex part of transcription export complex IEP Predicted GO
MF GO:0005507 copper ion binding IEP Predicted GO
MF GO:0008234 cysteine-type peptidase activity IEP Predicted GO
BP GO:0009116 nucleoside metabolic process IEP Predicted GO
BP GO:0019321 pentose metabolic process IEP Predicted GO
BP GO:0019566 arabinose metabolic process IEP Predicted GO
BP GO:0046373 L-arabinose metabolic process IEP Predicted GO
MF GO:0046556 alpha-L-arabinofuranosidase activity IEP Predicted GO
BP GO:1901657 glycosyl compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR006456 ZF_HD_homeobox_Cys/His_dimer 76 128
No external refs found!