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  5. Seita.6G190900.1

Seita.6G190900.1


Description : Unknown function


Gene families : OG_42_0000043 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000043_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.6G190900.1
Cluster HCAA Clusters: Cluster_72

Target Alias Description ECC score Gene Family Method Actions
A4A49_24130 No alias e3 ubiquitin-protein ligase ring1-like protein 0.02 Orthogroups_2024-Update
At3g13228 No alias RING/U-box superfamily protein... 0.02 Orthogroups_2024-Update
Bradi3g56300 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Bradi4g44277 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Brara.C00964.1 No alias signal transducer of abscisic acid perception *(AIP2) 0.03 Orthogroups_2024-Update
Brara.C03342.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Brara.I05006.1 No alias E3 ubiquitin ligase *(SNIPER) 0.02 Orthogroups_2024-Update
GRMZM2G021480 No alias RING/U-box superfamily protein 0.05 Orthogroups_2024-Update
Glyma.12G131800 No alias RING/U-box superfamily protein 0.04 Orthogroups_2024-Update
MA_10428335g0020 No alias (at3g19950 : 167.0) RING/U-box superfamily protein;... 0.03 Orthogroups_2024-Update
PSME_00026521-RA No alias (at3g19950 : 152.0) RING/U-box superfamily protein;... 0.02 Orthogroups_2024-Update
Potri.002G085800 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Seita.1G332400.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.4G208100.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Sobic.005G165900.1 No alias Unknown function 0.06 Orthogroups_2024-Update
Solyc02g065650 No alias LOW QUALITY:RING/U-box superfamily protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
Solyc05g018050 No alias LOW QUALITY:RING/U-box superfamily protein (AHRD V3.3... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004126 cytidine deaminase activity IEP Predicted GO
BP GO:0006213 pyrimidine nucleoside metabolic process IEP Predicted GO
BP GO:0006216 cytidine catabolic process IEP Predicted GO
BP GO:0009116 nucleoside metabolic process IEP Predicted GO
BP GO:0009119 ribonucleoside metabolic process IEP Predicted GO
BP GO:0009164 nucleoside catabolic process IEP Predicted GO
BP GO:0009972 cytidine deamination IEP Predicted GO
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Predicted GO
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Predicted GO
MF GO:0019239 deaminase activity IEP Predicted GO
BP GO:0019439 aromatic compound catabolic process IEP Predicted GO
BP GO:0034655 nucleobase-containing compound catabolic process IEP Predicted GO
BP GO:0034656 nucleobase-containing small molecule catabolic process IEP Predicted GO
BP GO:0042454 ribonucleoside catabolic process IEP Predicted GO
BP GO:0044270 cellular nitrogen compound catabolic process IEP Predicted GO
BP GO:0044282 small molecule catabolic process IEP Predicted GO
BP GO:0046087 cytidine metabolic process IEP Predicted GO
BP GO:0046131 pyrimidine ribonucleoside metabolic process IEP Predicted GO
BP GO:0046133 pyrimidine ribonucleoside catabolic process IEP Predicted GO
BP GO:0046135 pyrimidine nucleoside catabolic process IEP Predicted GO
BP GO:0046700 heterocycle catabolic process IEP Predicted GO
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP Predicted GO
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Predicted GO
BP GO:0072529 pyrimidine-containing compound catabolic process IEP Predicted GO
BP GO:1901136 carbohydrate derivative catabolic process IEP Predicted GO
BP GO:1901361 organic cyclic compound catabolic process IEP Predicted GO
BP GO:1901565 organonitrogen compound catabolic process IEP Predicted GO
BP GO:1901657 glycosyl compound metabolic process IEP Predicted GO
BP GO:1901658 glycosyl compound catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 218 246
No external refs found!