Seita.6G198700.1


Description : component *(mS78/mS79) of small mitoribosomal-subunit proteome


Gene families : OG_42_0001076 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001076_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.6G198700.1
Cluster HCAA Clusters: Cluster_225

Target Alias Description ECC score Gene Family Method Actions
At1g55890 No alias Pentatricopeptide repeat-containing protein At1g55890,... 0.02 Orthogroups_2024-Update
Brara.A03285.1 No alias component *(mS78/mS79) of small mitoribosomal-subunit proteome 0.02 Orthogroups_2024-Update
Brara.C03453.1 No alias component *(mS78/mS79) of small mitoribosomal-subunit proteome 0.03 Orthogroups_2024-Update
Glyma.08G061500 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
PSME_00052702-RA No alias (at1g61870 : 222.0) pentatricopeptide repeat 336... 0.03 Orthogroups_2024-Update
Potri.007G028400 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Solyc02g062910 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.04 Orthogroups_2024-Update
Solyc02g079820 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update
Solyc03g031460 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
Solyc05g012250 No alias Purple acid phosphatase (AHRD V3.3 --* A0A0V0INC4_SOLCH) 0.02 Orthogroups_2024-Update
Sopen02g013930 No alias PPR repeat family 0.03 Orthogroups_2024-Update
Sopen02g030320 No alias PPR repeat family 0.05 Orthogroups_2024-Update
Sopen03g005350 No alias PPR repeat family 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
BP GO:0006397 mRNA processing IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 165 190
IPR002885 Pentatricopeptide_repeat 197 219
IPR002885 Pentatricopeptide_repeat 333 377
IPR002885 Pentatricopeptide_repeat 230 276
No external refs found!