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  5. Seita.6G207200.1

Seita.6G207200.1


Description : RNA editing factor *(REME1)


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.6G207200.1
Cluster HCAA Clusters: Cluster_97

Target Alias Description ECC score Gene Family Method Actions
118230 No alias mitochondrial editing factor 22 0.04 Orthogroups_2024-Update
A4A49_13653 No alias pentatricopeptide repeat-containing protein 0.03 Orthogroups_2024-Update
Bradi1g01970 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.06 Orthogroups_2024-Update
Bradi1g38705 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Bradi1g54840 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi2g13297 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi3g37252 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Bradi3g52870 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Bradi4g15307 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Bradi4g19150 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Bradi4g42160 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Bradi5g12970 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Orthogroups_2024-Update
Brara.G00298.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU4Hr1G016720.1 No alias Unknown function 0.06 Orthogroups_2024-Update
LOC_Os08g33700 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os12g06070 No alias expressed protein 0.02 Orthogroups_2024-Update
MA_135075g0020 No alias (at3g57430 : 714.0) Encodes a chloroplast RNA editing... 0.02 Orthogroups_2024-Update
MA_32723g0010 No alias (at2g13600 : 442.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
Potri.005G202600 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.04 Orthogroups_2024-Update
Sobic.001G478900.2 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.003G030100.1 No alias RNA editing factor *(CWM1) 0.05 Orthogroups_2024-Update
Sobic.003G142400.2 No alias RNA editing factor *(PGN) 0.03 Orthogroups_2024-Update
Sobic.010G088200.1 No alias Unknown function 0.06 Orthogroups_2024-Update
Sobic.010G258600.1 No alias Unknown function 0.06 Orthogroups_2024-Update
Solyc02g094480 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006397 mRNA processing IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 333 379
IPR002885 Pentatricopeptide_repeat 235 281
IPR002885 Pentatricopeptide_repeat 135 183
IPR002885 Pentatricopeptide_repeat 209 232
IPR002885 Pentatricopeptide_repeat 409 432
IPR032867 DYW_dom 549 641
No external refs found!