Seita.6G212000.1

Description : ARF-type transcription factor & auxin signal mediator *(ARF7/ARF19)

Gene families : OG_42_0000050 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000050_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Setaria italica: Seita.6G212000.1
Cluster	HCAA Clusters: Cluster_60

Target	Alias	Description	ECC score	Gene Family Method
Bradi3g03407	No alias	Transcriptional factor B3 family protein /...	0.02	Orthogroups_2024-Update
Bradi3g40437	No alias	Transcriptional factor B3 family protein /...	0.06	Orthogroups_2024-Update
Bradi4g07470	No alias	auxin response factor 2	0.03	Orthogroups_2024-Update
Brara.A02353.1	No alias	ARF-type transcription factor	0.03	Orthogroups_2024-Update
Glyma.01G103500	No alias	auxin response factor 9	0.05	Orthogroups_2024-Update
Glyma.05G200800	No alias	auxin response factor 2	0.03	Orthogroups_2024-Update
Glyma.06G164900	No alias	auxin response factor 2	0.03	Orthogroups_2024-Update
Glyma.08G008100	No alias	auxin response factor 2	0.05	Orthogroups_2024-Update
Glyma.13G234200	No alias	Transcriptional factor B3 family protein /...	0.03	Orthogroups_2024-Update
Glyma.14G208500	No alias	auxin response factor 8	0.03	Orthogroups_2024-Update
LOC_Os12g29520	No alias	auxin response factor, putative, expressed	0.03	Orthogroups_2024-Update
Mp4g11820.1	No alias	transcription factor (ARF)	0.02	Orthogroups_2024-Update
Potri.004G228800	No alias	auxin response factor 1	0.02	Orthogroups_2024-Update
Potri.008G039000	No alias	auxin response factor 16	0.02	Orthogroups_2024-Update
Pp1s133_56V6	No alias	auxin response factor 8	0.02	Orthogroups_2024-Update
Pp1s64_138V6	No alias	arf1-binding protein	0.02	Orthogroups_2024-Update
Sobic.007G203500.1	No alias	ARF-type transcription factor & auxin signal mediator...	0.04	Orthogroups_2024-Update
Solyc01g096070	No alias	Auxin Response Factor 18	0.03	Orthogroups_2024-Update
Sopen02g011920	No alias	Auxin response factor	0.02	Orthogroups_2024-Update
Sopen02g022450	No alias	Auxin response factor	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	16Dec
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	16Dec
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	16Dec
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	IEA	16Dec
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	Predicted GO
MF	GO:0004435	phosphatidylinositol phospholipase C activity	IEP	Predicted GO
MF	GO:0004518	nuclease activity	IEP	Predicted GO
MF	GO:0004525	ribonuclease III activity	IEP	Predicted GO
MF	GO:0004620	phospholipase activity	IEP	Predicted GO
MF	GO:0004629	phospholipase C activity	IEP	Predicted GO
MF	GO:0005515	protein binding	IEP	Predicted GO
CC	GO:0005694	chromosome	IEP	Predicted GO
BP	GO:0006354	DNA-templated transcription, elongation	IEP	Predicted GO
BP	GO:0006368	transcription elongation from RNA polymerase II promoter	IEP	Predicted GO
BP	GO:0006721	terpenoid metabolic process	IEP	Predicted GO
CC	GO:0008023	transcription elongation factor complex	IEP	Predicted GO
MF	GO:0008483	transaminase activity	IEP	Predicted GO
MF	GO:0008661	1-deoxy-D-xylulose-5-phosphate synthase activity	IEP	Predicted GO
BP	GO:0009987	cellular process	IEP	Predicted GO
BP	GO:0016114	terpenoid biosynthetic process	IEP	Predicted GO
MF	GO:0016298	lipase activity	IEP	Predicted GO
CC	GO:0016593	Cdc73/Paf1 complex	IEP	Predicted GO
MF	GO:0016744	transferase activity, transferring aldehyde or ketonic groups	IEP	Predicted GO
MF	GO:0016769	transferase activity, transferring nitrogenous groups	IEP	Predicted GO
MF	GO:0016788	hydrolase activity, acting on ester bonds	IEP	Predicted GO
MF	GO:0017076	purine nucleotide binding	IEP	Predicted GO
MF	GO:0030554	adenyl nucleotide binding	IEP	Predicted GO
MF	GO:0031625	ubiquitin protein ligase binding	IEP	Predicted GO
MF	GO:0032296	double-stranded RNA-specific ribonuclease activity	IEP	Predicted GO
MF	GO:0032553	ribonucleotide binding	IEP	Predicted GO
MF	GO:0032555	purine ribonucleotide binding	IEP	Predicted GO
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Predicted GO
MF	GO:0036094	small molecule binding	IEP	Predicted GO
MF	GO:0042578	phosphoric ester hydrolase activity	IEP	Predicted GO
MF	GO:0043167	ion binding	IEP	Predicted GO
MF	GO:0043168	anion binding	IEP	Predicted GO
BP	GO:0043248	proteasome assembly	IEP	Predicted GO
MF	GO:0043531	ADP binding	IEP	Predicted GO
MF	GO:0044389	ubiquitin-like protein ligase binding	IEP	Predicted GO
MF	GO:0060090	molecular adaptor activity	IEP	Predicted GO
MF	GO:0097367	carbohydrate derivative binding	IEP	Predicted GO
MF	GO:1901265	nucleoside phosphate binding	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR010525	Auxin_resp	258	341
IPR033389	AUX/IAA_dom	978	1066
IPR003340	B3_DNA-bd	132	233

External Links

No external refs found!

Seita.6G212000.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation