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  5. Seita.6G217300.1

Seita.6G217300.1


Description : component *(eL32) of large ribosomal-subunit (LSU) proteome


Gene families : OG_42_0001481 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001481_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.6G217300.1
Cluster HCAA Clusters: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
146656 No alias Ribosomal protein L32e 0.08 Orthogroups_2024-Update
A4A49_20600 No alias 60s ribosomal protein l32-1 0.14 Orthogroups_2024-Update
A4A49_36410 No alias 60s ribosomal protein l32-1 0.14 Orthogroups_2024-Update
A4A49_65839 No alias 60s ribosomal protein l32-1 0.09 Orthogroups_2024-Update
AC197246.3_FG003 No alias Ribosomal protein L32e 0.13 Orthogroups_2024-Update
Bradi3g40840 No alias Ribosomal protein L32e 0.12 Orthogroups_2024-Update
Bradi3g40870 No alias Ribosomal protein L32e 0.12 Orthogroups_2024-Update
Bradi4g34360 No alias Ribosomal protein L32e 0.04 Orthogroups_2024-Update
Brara.A00927.1 No alias component *(eL32) of large ribosomal-subunit (LSU) proteome 0.14 Orthogroups_2024-Update
Brara.H00903.1 No alias component *(eL32) of large ribosomal-subunit (LSU) proteome 0.13 Orthogroups_2024-Update
Brara.K00462.1 No alias component *(eL32) of large ribosomal-subunit (LSU) proteome 0.2 Orthogroups_2024-Update
Cre06.g289550 No alias Ribosomal protein L32e 0.1 Orthogroups_2024-Update
GRMZM2G047971 No alias Ribosomal protein L32e 0.09 Orthogroups_2024-Update
GRMZM2G065868 No alias Ribosomal protein L32e 0.11 Orthogroups_2024-Update
Glyma.08G114000 No alias Ribosomal protein L32e 0.05 Orthogroups_2024-Update
Glyma.08G114100 No alias Ribosomal protein L32e 0.07 Orthogroups_2024-Update
Glyma.11G226800 No alias Ribosomal protein L32e 0.08 Orthogroups_2024-Update
Glyma.13G051200 No alias Ribosomal protein L32e 0.13 Orthogroups_2024-Update
Glyma.15G195500 No alias Ribosomal protein L32e 0.06 Orthogroups_2024-Update
HORVU5Hr1G075420.2 No alias component *(eL32) of large ribosomal-subunit (LSU) proteome 0.04 Orthogroups_2024-Update
HORVU5Hr1G075500.3 No alias component *(eL32) of large ribosomal-subunit (LSU) proteome 0.06 Orthogroups_2024-Update
HORVU7Hr1G052960.1 No alias component *(eL32) of large ribosomal-subunit (LSU) proteome 0.12 Orthogroups_2024-Update
Kfl00109_0130 kfl00109_0130_v1.1 (at4g18100 : 201.0) Ribosomal protein L32e; FUNCTIONS... 0.07 Orthogroups_2024-Update
LOC_Os08g41300 No alias 60S ribosomal protein L32, putative, expressed 0.04 Orthogroups_2024-Update
MA_10434621g0010 No alias (at4g18100 : 206.0) Ribosomal protein L32e; FUNCTIONS... 0.06 Orthogroups_2024-Update
MA_41569g0010 No alias (at4g18100 : 200.0) Ribosomal protein L32e; FUNCTIONS... 0.03 Orthogroups_2024-Update
Mp7g12480.1 No alias component RPL32 of LSU proteome component 0.07 Orthogroups_2024-Update
PSME_00016744-RA No alias (at4g18100 : 206.0) Ribosomal protein L32e; FUNCTIONS... 0.1 Orthogroups_2024-Update
PSME_00048254-RA No alias (at4g18100 : 203.0) Ribosomal protein L32e; FUNCTIONS... 0.03 Orthogroups_2024-Update
Potri.001G353900 No alias Ribosomal protein L32e 0.04 Orthogroups_2024-Update
Potri.002G249000 No alias Ribosomal protein L32e 0.07 Orthogroups_2024-Update
Potri.014G191000 No alias Ribosomal protein L32e 0.05 Orthogroups_2024-Update
Pp1s249_85V6 No alias 60s ribosomal protein l32 0.04 Orthogroups_2024-Update
Pp1s505_19V6 No alias 60s ribosomal protein l32 0.15 Orthogroups_2024-Update
Pp1s84_96V6 No alias 60s ribosomal protein l32 0.08 Orthogroups_2024-Update
Pp1s98_19V6 No alias 60s ribosomal protein l32 0.05 Orthogroups_2024-Update
Seita.2G262900.1 No alias component *(eL32) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
Seita.6G218600.1 No alias component *(eL32) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
Sobic.002G255100.1 No alias component *(eL32) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
Sobic.002G255300.1 No alias component *(eL32) of large ribosomal-subunit (LSU) proteome 0.13 Orthogroups_2024-Update
Sobic.007G197800.1 No alias component *(eL32) of large ribosomal-subunit (LSU) proteome 0.1 Orthogroups_2024-Update
Solyc02g070310 No alias 60S ribosomal protein L32 (AHRD V3.3 *** D7MRE7_ARALL) 0.07 Orthogroups_2024-Update
Solyc08g006900 No alias 60S ribosomal protein L32, putative (AHRD V3.3 *** B9T5H6_RICCO) 0.19 Orthogroups_2024-Update
Sopen02g019400 No alias Ribosomal protein L32 0.1 Orthogroups_2024-Update
Sopen08g002860 No alias Ribosomal protein L32 0.15 Orthogroups_2024-Update
evm.model.contig_3468.4 No alias (at4g18100 : 165.0) Ribosomal protein L32e; FUNCTIONS... 0.13 Orthogroups_2024-Update
evm.model.tig00020554.140 No alias (at4g18100 : 184.0) Ribosomal protein L32e; FUNCTIONS... 0.13 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA 16Dec
CC GO:0005840 ribosome IEA 16Dec
BP GO:0006412 translation IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0002097 tRNA wobble base modification IEP Predicted GO
BP GO:0002098 tRNA wobble uridine modification IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003746 translation elongation factor activity IEP Predicted GO
MF GO:0004176 ATP-dependent peptidase activity IEP Predicted GO
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Predicted GO
MF GO:0004826 phenylalanine-tRNA ligase activity IEP Predicted GO
MF GO:0004827 proline-tRNA ligase activity IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
BP GO:0006082 organic acid metabolic process IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006400 tRNA modification IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
BP GO:0006418 tRNA aminoacylation for protein translation IEP Predicted GO
BP GO:0006432 phenylalanyl-tRNA aminoacylation IEP Predicted GO
BP GO:0006433 prolyl-tRNA aminoacylation IEP Predicted GO
BP GO:0006520 cellular amino acid metabolic process IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Predicted GO
BP GO:0019752 carboxylic acid metabolic process IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
CC GO:0033588 Elongator holoenzyme complex IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
BP GO:0043038 amino acid activation IEP Predicted GO
BP GO:0043039 tRNA aminoacylation IEP Predicted GO
BP GO:0043436 oxoacid metabolic process IEP Predicted GO
BP GO:0044281 small molecule metabolic process IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
MF GO:1990380 Lys48-specific deubiquitinase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR001515 Ribosomal_L32e 16 122
No external refs found!