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  5. Seita.6G223600.1

Seita.6G223600.1


Description : MADS/AGL-type transcription factor


Gene families : OG_42_0000009 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.6G223600.1
Cluster HCAA Clusters: Cluster_10

Target Alias Description ECC score Gene Family Method Actions
Bradi1g69890 No alias K-box region and MADS-box transcription factor family protein 0.01 Orthogroups_2024-Update
Bradi2g43290 No alias AGAMOUS-like 62 0.01 Orthogroups_2024-Update
Bradi3g41260 No alias K-box region and MADS-box transcription factor family protein 0.01 Orthogroups_2024-Update
Bradi4g34680 No alias K-box region and MADS-box transcription factor family protein 0.01 Orthogroups_2024-Update
LOC_Os03g03070 No alias transcription factor, putative, expressed 0.01 Orthogroups_2024-Update
LOC_Os08g41960 No alias OsMADS37 - MADS-box family gene with MIKC* type-box, expressed 0.01 Orthogroups_2024-Update
LOC_Os09g32948 No alias OsMADS8 - MADS-box family gene with MIKCc type-box, expressed 0.02 Orthogroups_2024-Update
LOC_Os12g21880 No alias OsMADS74 - MADS-box family gene with M-alpha type-box, expressed 0.01 Orthogroups_2024-Update
Potri.001G251400 No alias AGAMOUS-like 62 0.02 Orthogroups_2024-Update
Potri.007G050400 No alias AGAMOUS-like 66 0.02 Orthogroups_2024-Update
Seita.1G273400.1 No alias regulatory protein *(SEPALLATA) of floral meristem... 0.01 Orthogroups_2024-Update
Seita.6G156800.1 No alias MADS/AGL-type transcription factor 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA 16Dec
MF GO:0046983 protein dimerization activity IEA 16Dec
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002100 TF_MADSbox 28 75
No external refs found!