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  5. Seita.6G223700.1

Seita.6G223700.1


Description : MADS/AGL-type transcription factor


Gene families : OG_42_0000009 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.6G223700.1
Cluster HCAA Clusters: Cluster_8

Target Alias Description ECC score Gene Family Method Actions
At5g51860 No alias MADS-box protein AGL72 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLH5] 0.06 Orthogroups_2024-Update
Bradi2g24940 No alias K-box region and MADS-box transcription factor family protein 0.03 Orthogroups_2024-Update
Brara.A01539.1 No alias MADS/AGL-type transcription factor 0.05 Orthogroups_2024-Update
GRMZM2G152862 No alias K-box region and MADS-box transcription factor family protein 0.05 Orthogroups_2024-Update
Glyma.07G080900 No alias AGAMOUS-like 20 0.04 Orthogroups_2024-Update
HORVU1Hr1G064150.2 No alias MADS/AGL-type transcription factor 0.04 Orthogroups_2024-Update
Potri.001G112400 No alias AGAMOUS-like 19 0.03 Orthogroups_2024-Update
Pp1s118_161V6 No alias mikc* mads-box transcription factor 0.02 Orthogroups_2024-Update
Solyc02g071730 No alias Tomato AGAMOUS 1 0.03 Orthogroups_2024-Update
Sopen06g026710 No alias K-box region 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA 16Dec
MF GO:0046983 protein dimerization activity IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0003333 amino acid transmembrane transport IEP Predicted GO
MF GO:0005216 ion channel activity IEP Predicted GO
BP GO:0006811 ion transport IEP Predicted GO
BP GO:0006820 anion transport IEP Predicted GO
BP GO:0006865 amino acid transport IEP Predicted GO
MF GO:0015267 channel activity IEP Predicted GO
BP GO:0015711 organic anion transport IEP Predicted GO
BP GO:0015849 organic acid transport IEP Predicted GO
MF GO:0022803 passive transmembrane transporter activity IEP Predicted GO
MF GO:0022838 substrate-specific channel activity IEP Predicted GO
BP GO:0034220 ion transmembrane transport IEP Predicted GO
BP GO:0046942 carboxylic acid transport IEP Predicted GO
BP GO:0055085 transmembrane transport IEP Predicted GO
BP GO:0098656 anion transmembrane transport IEP Predicted GO
BP GO:1903825 organic acid transmembrane transport IEP Predicted GO
BP GO:1905039 carboxylic acid transmembrane transport IEP Predicted GO
InterPro domains Description Start Stop
IPR002100 TF_MADSbox 34 81
No external refs found!