Seita.6G231700.1


Description : component *(eL38) of large ribosomal-subunit (LSU) proteome


Gene families : OG_42_0001927 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001927_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.6G231700.1
Cluster HCAA Clusters: Cluster_37

Target Alias Description ECC score Gene Family Method Actions
270247 No alias Ribosomal L38e protein family 0.09 Orthogroups_2024-Update
A4A49_59471 No alias 60s ribosomal protein l38 0.13 Orthogroups_2024-Update
Bradi1g25302 No alias Ribosomal L38e protein family 0.04 Orthogroups_2024-Update
Bradi3g41837 No alias Ribosomal L38e protein family 0.04 Orthogroups_2024-Update
Brara.C02203.1 No alias component *(eL38) of large ribosomal-subunit (LSU) proteome 0.07 Orthogroups_2024-Update
Brara.E00357.1 No alias component *(eL38) of large ribosomal-subunit (LSU) proteome 0.14 Orthogroups_2024-Update
Brara.I04090.1 No alias component *(eL38) of large ribosomal-subunit (LSU) proteome 0.07 Orthogroups_2024-Update
Cre07.g325746 No alias Ribosomal L38e protein family 0.08 Orthogroups_2024-Update
Glyma.08G100000 No alias Ribosomal L38e protein family 0.1 Orthogroups_2024-Update
Kfl00433_0040 kfl00433_0040_v1.1 (at3g59540 : 122.0) Ribosomal L38e protein family;... 0.05 Orthogroups_2024-Update
MA_20588g0010 No alias (at3g59540 : 129.0) Ribosomal L38e protein family;... 0.1 Orthogroups_2024-Update
PSME_00035421-RA No alias (at3g59540 : 127.0) Ribosomal L38e protein family;... 0.11 Orthogroups_2024-Update
Potri.007G131800 No alias Ribosomal L38e protein family 0.11 Orthogroups_2024-Update
Potri.010G181200 No alias Ribosomal L38e protein family 0.1 Orthogroups_2024-Update
Potri.017G020000 No alias Ribosomal L38e protein family 0.04 Orthogroups_2024-Update
Pp1s227_122V6 No alias 60s ribosomal protein l38 0.12 Orthogroups_2024-Update
Pp1s288_10V6 No alias 60s ribosomal protein l38 0.12 Orthogroups_2024-Update
Pp1s46_212V6 No alias 60s ribosomal protein l38 0.06 Orthogroups_2024-Update
Pp1s67_172V6 No alias 60s ribosomal protein l38 0.17 Orthogroups_2024-Update
Sobic.002G331300.1 No alias component *(eL38) of large ribosomal-subunit (LSU) proteome 0.09 Orthogroups_2024-Update
Sobic.007G184600.2 No alias component *(eL38) of large ribosomal-subunit (LSU) proteome 0.17 Orthogroups_2024-Update
Solyc05g055640 No alias ARM repeat superfamily protein (AHRD V3.3 --* AT1G12930.1) 0.08 Orthogroups_2024-Update
Solyc11g008510 No alias 60S ribosomal protein L38 (AHRD V3.3 *** RL38_SOLLC) 0.17 Orthogroups_2024-Update
Sopen05g034080 No alias Ribosomal L38e protein family 0.04 Orthogroups_2024-Update
Sopen11g004300 No alias Ribosomal L38e protein family 0.13 Orthogroups_2024-Update
evm.model.tig00021719.6 No alias (at3g59540 : 110.0) Ribosomal L38e protein family;... 0.15 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA 16Dec
CC GO:0005840 ribosome IEA 16Dec
BP GO:0006412 translation IEA 16Dec
Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003746 translation elongation factor activity IEP Predicted GO
CC GO:0005742 mitochondrial outer membrane translocase complex IEP Predicted GO
CC GO:0005759 mitochondrial matrix IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
BP GO:0006839 mitochondrial transport IEP Predicted GO
MF GO:0008565 protein transporter activity IEP Predicted GO
CC GO:0015934 large ribosomal subunit IEP Predicted GO
BP GO:0017038 protein import IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
BP GO:0030150 protein import into mitochondrial matrix IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
MF GO:0032977 membrane insertase activity IEP Predicted GO
BP GO:0033365 protein localization to organelle IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
CC GO:0044391 ribosomal subunit IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044429 mitochondrial part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044455 mitochondrial membrane part IEP Predicted GO
BP GO:0044743 protein transmembrane import into intracellular organelle IEP Predicted GO
BP GO:0065002 intracellular protein transmembrane transport IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
BP GO:0070585 protein localization to mitochondrion IEP Predicted GO
BP GO:0071806 protein transmembrane transport IEP Predicted GO
BP GO:0072594 establishment of protein localization to organelle IEP Predicted GO
BP GO:0072655 establishment of protein localization to mitochondrion IEP Predicted GO
CC GO:0098799 outer mitochondrial membrane protein complex IEP Predicted GO
BP GO:1990542 mitochondrial transmembrane transport IEP Predicted GO
InterPro domains Description Start Stop
IPR002675 Ribosomal_L38e 87 154
No external refs found!