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  5. Seita.6G254100.1

Seita.6G254100.1


Description : Unknown function


Gene families : OG_42_0000641 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000641_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.6G254100.1
Cluster HCAA Clusters: Cluster_230

Target Alias Description ECC score Gene Family Method Actions
PSME_00010376-RA No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA 16Dec
MF GO:0008270 zinc ion binding IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
MF GO:0004190 aspartic-type endopeptidase activity IEP Predicted GO
MF GO:0004869 cysteine-type endopeptidase inhibitor activity IEP Predicted GO
CC GO:0005789 endoplasmic reticulum membrane IEP Predicted GO
BP GO:0006397 mRNA processing IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
BP GO:0043248 proteasome assembly IEP Predicted GO
CC GO:0044432 endoplasmic reticulum part IEP Predicted GO
MF GO:0070001 aspartic-type peptidase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 152 168
IPR001878 Znf_CCHC 111 127
IPR036546 MED15_KIX 3 82
No external refs found!