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  5. Seita.6G255600.1

Seita.6G255600.1


Description : component *(SMC1/TTN8) of cohesin regulator complex


Gene families : OG_42_0004165 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004165_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.6G255600.1
Cluster HCAA Clusters: Cluster_60

Target Alias Description ECC score Gene Family Method Actions
At3g54670 No alias Structural maintenance of chromosomes protein 1... 0.04 Orthogroups_2024-Update
Bradi3g12830 No alias Structural maintenance of chromosomes (SMC) family protein 0.07 Orthogroups_2024-Update
Cre15.g635800 No alias Structural maintenance of chromosomes (SMC) family protein 0.01 Orthogroups_2024-Update
Glyma.10G037300 No alias Structural maintenance of chromosomes (SMC) family protein 0.03 Orthogroups_2024-Update
Glyma.13G123700 No alias Structural maintenance of chromosomes (SMC) family protein 0.03 Orthogroups_2024-Update
HORVU7Hr1G066300.15 No alias component *(SMC1/TTN8) of cohesin regulator complex 0.05 Orthogroups_2024-Update
Potri.005G224900 No alias Structural maintenance of chromosomes (SMC) family protein 0.03 Orthogroups_2024-Update
Sobic.007G161000.1 No alias component *(SMC1/TTN8) of cohesin regulator complex 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
MF GO:0005524 ATP binding IEA 16Dec
CC GO:0005694 chromosome IEA 16Dec
BP GO:0051276 chromosome organization IEA 16Dec
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Predicted GO
MF GO:0003997 acyl-CoA oxidase activity IEP Predicted GO
MF GO:0004435 phosphatidylinositol phospholipase C activity IEP Predicted GO
MF GO:0004620 phospholipase activity IEP Predicted GO
MF GO:0004629 phospholipase C activity IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005777 peroxisome IEP Predicted GO
BP GO:0006325 chromatin organization IEP Predicted GO
BP GO:0006338 chromatin remodeling IEP Predicted GO
BP GO:0006354 DNA-templated transcription, elongation IEP Predicted GO
BP GO:0006366 transcription by RNA polymerase II IEP Predicted GO
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEP Predicted GO
BP GO:0006464 cellular protein modification process IEP Predicted GO
BP GO:0006635 fatty acid beta-oxidation IEP Predicted GO
BP GO:0006887 exocytosis IEP Predicted GO
CC GO:0008023 transcription elongation factor complex IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
BP GO:0009062 fatty acid catabolic process IEP Predicted GO
BP GO:0016042 lipid catabolic process IEP Predicted GO
BP GO:0016054 organic acid catabolic process IEP Predicted GO
BP GO:0016192 vesicle-mediated transport IEP Predicted GO
MF GO:0016298 lipase activity IEP Predicted GO
BP GO:0016569 covalent chromatin modification IEP Predicted GO
BP GO:0016570 histone modification IEP Predicted GO
CC GO:0016593 Cdc73/Paf1 complex IEP Predicted GO
MF GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor IEP Predicted GO
BP GO:0019395 fatty acid oxidation IEP Predicted GO
BP GO:0022607 cellular component assembly IEP Predicted GO
BP GO:0030258 lipid modification IEP Predicted GO
MF GO:0031625 ubiquitin protein ligase binding IEP Predicted GO
BP GO:0032940 secretion by cell IEP Predicted GO
BP GO:0034440 lipid oxidation IEP Predicted GO
BP GO:0034622 cellular protein-containing complex assembly IEP Predicted GO
BP GO:0036211 protein modification process IEP Predicted GO
MF GO:0042393 histone binding IEP Predicted GO
CC GO:0042579 microbody IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
BP GO:0043248 proteasome assembly IEP Predicted GO
BP GO:0043412 macromolecule modification IEP Predicted GO
BP GO:0043933 protein-containing complex subunit organization IEP Predicted GO
BP GO:0044242 cellular lipid catabolic process IEP Predicted GO
MF GO:0044389 ubiquitin-like protein ligase binding IEP Predicted GO
CC GO:0044448 cell cortex part IEP Predicted GO
BP GO:0046395 carboxylic acid catabolic process IEP Predicted GO
BP GO:0046903 secretion IEP Predicted GO
MF GO:0060090 molecular adaptor activity IEP Predicted GO
MF GO:0061666 UFM1 ligase activity IEP Predicted GO
BP GO:0065003 protein-containing complex assembly IEP Predicted GO
BP GO:0070070 proton-transporting V-type ATPase complex assembly IEP Predicted GO
BP GO:0070071 proton-transporting two-sector ATPase complex assembly IEP Predicted GO
BP GO:0070072 vacuolar proton-transporting V-type ATPase complex assembly IEP Predicted GO
MF GO:0071568 UFM1 transferase activity IEP Predicted GO
BP GO:0071569 protein ufmylation IEP Predicted GO
BP GO:0072329 monocarboxylic acid catabolic process IEP Predicted GO
CC GO:0099023 tethering complex IEP Predicted GO
InterPro domains Description Start Stop
IPR003395 RecF/RecN/SMC_N 25 1215
IPR010935 SMC_hinge 532 647
No external refs found!