1. Home
  2. Species
  3. Setaria italica
  4. Sequence
  5. Seita.7G029300.1

Seita.7G029300.1


Description : alpha-class expansin


Gene families : OG_42_0000014 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000014_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Setaria italica: Seita.7G029300.1
Cluster HCAA Clusters: Cluster_190

Target Alias Description ECC score Gene Family Method Actions
231226 No alias expansin A9 0.03 Orthogroups_2024-Update
91129 No alias expansin A15 0.03 Orthogroups_2024-Update
A4A49_26789 No alias expansin-a3 0.02 Orthogroups_2024-Update
At1g62980 No alias Expansin-A18 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ07] 0.03 Orthogroups_2024-Update
Bradi5g04120 No alias expansin 11 0.04 Orthogroups_2024-Update
Brara.F03107.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
Brara.F03390.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
Glyma.06G195000 No alias expansin A15 0.03 Orthogroups_2024-Update
Glyma.18G265400 No alias expansin A23 0.04 Orthogroups_2024-Update
HORVU0Hr1G032890.2 No alias Unknown function 0.04 Orthogroups_2024-Update
LOC_Os02g16839 No alias expansin precursor, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os02g51040 No alias expansin precursor, putative, expressed 0.04 Orthogroups_2024-Update
LOC_Os03g06020 No alias expansin precursor, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os03g21820 No alias expansin precursor, putative, expressed 0.04 Orthogroups_2024-Update
LOC_Os03g60720 No alias expansin precursor, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os04g49410 No alias expansin precursor, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os06g01920 No alias expansin precursor, putative, expressed 0.03 Orthogroups_2024-Update
MA_114349g0010 No alias (at1g26770 : 288.0) Encodes an expansin. Naming... 0.03 Orthogroups_2024-Update
MA_316222g0010 No alias (at2g40610 : 383.0) member of Alpha-Expansin Gene... 0.03 Orthogroups_2024-Update
MA_86877g0010 No alias (at1g69530 : 387.0) Member of Alpha-Expansin Gene... 0.03 Orthogroups_2024-Update
PSME_00000910-RA No alias (at5g05290 : 323.0) Encodes an expansin. Naming... 0.03 Orthogroups_2024-Update
PSME_00018430-RA No alias (at2g40610 : 404.0) member of Alpha-Expansin Gene... 0.02 Orthogroups_2024-Update
PSME_00025835-RA No alias (at1g26770 : 394.0) Encodes an expansin. Naming... 0.02 Orthogroups_2024-Update
PSME_00040125-RA No alias (q40636|expa2_orysa : 389.0) Expansin-A2 precursor... 0.02 Orthogroups_2024-Update
PSME_00052085-RA No alias (at1g69530 : 372.0) Member of Alpha-Expansin Gene... 0.03 Orthogroups_2024-Update
Potri.004G123200 No alias expansin A1 0.03 Orthogroups_2024-Update
Potri.006G086100 No alias Barwin-like endoglucanases superfamily protein 0.05 Orthogroups_2024-Update
Potri.017G140000 No alias expansin A13 0.02 Orthogroups_2024-Update
Pp1s25_294V6 No alias expansin 2 0.02 Orthogroups_2024-Update
Sobic.001G314600.1 No alias alpha-class expansin 0.03 Orthogroups_2024-Update
Sobic.003G128800.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
Sobic.003G444400.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
Sobic.004G121700.1 No alias alpha-class expansin 0.03 Orthogroups_2024-Update
Sopen04g035500 No alias Pollen allergen 0.02 Orthogroups_2024-Update
Sopen08g003710 No alias Rare lipoprotein A (RlpA)-like double-psi beta-barrel 0.02 Orthogroups_2024-Update
Sopen09g005600 No alias Pollen allergen 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000347 THO complex IEP Predicted GO
CC GO:0000445 THO complex part of transcription export complex IEP Predicted GO
MF GO:0005507 copper ion binding IEP Predicted GO
MF GO:0008171 O-methyltransferase activity IEP Predicted GO
BP GO:0009116 nucleoside metabolic process IEP Predicted GO
BP GO:0019321 pentose metabolic process IEP Predicted GO
BP GO:0019566 arabinose metabolic process IEP Predicted GO
BP GO:0046373 L-arabinose metabolic process IEP Predicted GO
MF GO:0046556 alpha-L-arabinofuranosidase activity IEP Predicted GO
MF GO:0046983 protein dimerization activity IEP Predicted GO
BP GO:1901657 glycosyl compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR007117 Expansin_CBD 166 243
IPR009009 RlpA-like_DPBB 67 155
No external refs found!